Kamil Slowikowski
@slowkow.com
Computational biologist 🧬🖥️ at Mass General Brigham and Broad Institute, PhD at Harvard. Bioinformatics, transcriptomics, COVID, genomics, immunology, genetics, statistics, and web development. I made #ggrepel and I blog at https://slowkow.com
Reposted by Kamil Slowikowski
The incidence and prevalence of #melanoma, the fifth most common cancer in the US, have increased over the last 5 decades.
This Review summarizes the epidemiology, pathophysiology, diagnosis, and treatment of cutaneous melanoma.
ja.ma/4j1AhEC
This Review summarizes the epidemiology, pathophysiology, diagnosis, and treatment of cutaneous melanoma.
ja.ma/4j1AhEC
December 16, 2025 at 4:45 PM
The incidence and prevalence of #melanoma, the fifth most common cancer in the US, have increased over the last 5 decades.
This Review summarizes the epidemiology, pathophysiology, diagnosis, and treatment of cutaneous melanoma.
ja.ma/4j1AhEC
This Review summarizes the epidemiology, pathophysiology, diagnosis, and treatment of cutaneous melanoma.
ja.ma/4j1AhEC
Reposted by Kamil Slowikowski
We are very excited to share the first preprint of a new direction for our group. Led by the fearless duo of @arthurwchow.bsky.social and @hoyinchu.bsky.social, our foray into computational protein design—
Sequence and structural determinants of efficacious de novo chimeric antigen receptors https://www.biorxiv.org/content/10.64898/2025.12.12.694033v1
December 14, 2025 at 10:38 AM
We are very excited to share the first preprint of a new direction for our group. Led by the fearless duo of @arthurwchow.bsky.social and @hoyinchu.bsky.social, our foray into computational protein design—
Reposted by Kamil Slowikowski
This is shocking stuff. John Quackenbush has been brilliant since forever. www.statnews.com/2025/12/05/r...
His lab was humming with discovery. After one year under Trump, it’s almost silent
John Quackenbush built a lab that is at the forefront of human genetics research and bioinformatics. Trump administration cuts have put it in danger of collapse.
www.statnews.com
December 10, 2025 at 7:37 AM
This is shocking stuff. John Quackenbush has been brilliant since forever. www.statnews.com/2025/12/05/r...
You run a new command in #rlang #python #bash, and you don’t really know how long it should take.
Will it be done in 30 seconds? 5 minutes? 45 minutes? Longer? 😫
An automatic notification might help to stay focused on #programming
Let me introduce you to ntfy.sh
slowkow.com/notes/ntfy/
Will it be done in 30 seconds? 5 minutes? 45 minutes? Longer? 😫
An automatic notification might help to stay focused on #programming
Let me introduce you to ntfy.sh
slowkow.com/notes/ntfy/
Get notifications on desktop and mobile from long-running jobs in your terminal sessions
If you’re like me, you get tired of waiting for long-running jobs in the terminal. You run a new command, and you don’t really know how long it should take to finish.
Will it be done in 30 seconds? 5 ...
slowkow.com
December 4, 2025 at 2:55 PM
You run a new command in #rlang #python #bash, and you don’t really know how long it should take.
Will it be done in 30 seconds? 5 minutes? 45 minutes? Longer? 😫
An automatic notification might help to stay focused on #programming
Let me introduce you to ntfy.sh
slowkow.com/notes/ntfy/
Will it be done in 30 seconds? 5 minutes? 45 minutes? Longer? 😫
An automatic notification might help to stay focused on #programming
Let me introduce you to ntfy.sh
slowkow.com/notes/ntfy/
Cruz Godar shares stunning Javascript and webGL applets that demonstrate the beauty of mathematics.
cruzgodar.com
cruzgodar.com
December 1, 2025 at 7:43 PM
Cruz Godar shares stunning Javascript and webGL applets that demonstrate the beauty of mathematics.
cruzgodar.com
cruzgodar.com
Reposted by Kamil Slowikowski
A bad thing is unfolding at NIH this week: It looks like the Trump administration is trying to replace key civil servant scientific leaders, the Institute Directors, with political hires. These directors control the NIH budget, tens of billions.
A bit of a video explainer here: 1/ 🧪
A bit of a video explainer here: 1/ 🧪
November 13, 2025 at 10:31 PM
A bad thing is unfolding at NIH this week: It looks like the Trump administration is trying to replace key civil servant scientific leaders, the Institute Directors, with political hires. These directors control the NIH budget, tens of billions.
A bit of a video explainer here: 1/ 🧪
A bit of a video explainer here: 1/ 🧪
Reposted by Kamil Slowikowski
Check out our new paper @nejm.org. RSV, COVID-19 & Influenza vaccines continue to show consistent effectiveness & safety based on a review & synthesis of 500+ research studies👇! We worked hard to evaluate the evidence so you can be confident about getting vaccinated this fall!
Even as the anti-vax lobby erodes public trust, new evidence confirms that "immunizations against Covid-19, RSV, and influenza have shown consistent effectiveness & safety and are associated with a substantially reduced risk of hospitalization & severe disease"
www.nejm.org/doi/full/10....
www.nejm.org/doi/full/10....
October 31, 2025 at 2:54 PM
Check out our new paper @nejm.org. RSV, COVID-19 & Influenza vaccines continue to show consistent effectiveness & safety based on a review & synthesis of 500+ research studies👇! We worked hard to evaluate the evidence so you can be confident about getting vaccinated this fall!
Reposted by Kamil Slowikowski
South Carolina schools recently sent home unvaccinated kids to stem a growing measles outbreak. It turned out 5 of them were infected and, if they'd been at school, could've unwittingly spread it to their classmates for days.
That kind of precaution is now illegal in Idaho.
That kind of precaution is now illegal in Idaho.
Idaho Banned Vaccine Mandates. Activists Want to Make It a Model for the Country.
The Idaho Medical Freedom Act makes it illegal to require anyone to take a vaccine or receive “medical intervention.” Leslie Manookian, the activist behind the law, hopes to make it a “societal norm” ...
www.propublica.org
October 26, 2025 at 11:00 PM
South Carolina schools recently sent home unvaccinated kids to stem a growing measles outbreak. It turned out 5 of them were infected and, if they'd been at school, could've unwittingly spread it to their classmates for days.
That kind of precaution is now illegal in Idaho.
That kind of precaution is now illegal in Idaho.
Reposted by Kamil Slowikowski
New release of PowerLMM.js! Browser-based power analysis for longitudinal models with dropout.
Now includes:
- Power analysis summary report
- Reproducible & shareable configs (URL/JSON)
- Calculations validated against R
- Hypothesis region visualization
powerlmmjs.rpsychologist.com
Now includes:
- Power analysis summary report
- Reproducible & shareable configs (URL/JSON)
- Calculations validated against R
- Hypothesis region visualization
powerlmmjs.rpsychologist.com
October 28, 2025 at 2:02 PM
New release of PowerLMM.js! Browser-based power analysis for longitudinal models with dropout.
Now includes:
- Power analysis summary report
- Reproducible & shareable configs (URL/JSON)
- Calculations validated against R
- Hypothesis region visualization
powerlmmjs.rpsychologist.com
Now includes:
- Power analysis summary report
- Reproducible & shareable configs (URL/JSON)
- Calculations validated against R
- Hypothesis region visualization
powerlmmjs.rpsychologist.com
Reposted by Kamil Slowikowski
Long Covid Is Real — And It’s Changing an Entire Generation
Hundreds of thousands of kids in America are struggling with an illness that many doctors and schools refuse to recognize.e
Feature: www.rollingstone.com/culture/cult...
Hundreds of thousands of kids in America are struggling with an illness that many doctors and schools refuse to recognize.e
Feature: www.rollingstone.com/culture/cult...
October 16, 2025 at 12:00 PM
Long Covid Is Real — And It’s Changing an Entire Generation
Hundreds of thousands of kids in America are struggling with an illness that many doctors and schools refuse to recognize.e
Feature: www.rollingstone.com/culture/cult...
Hundreds of thousands of kids in America are struggling with an illness that many doctors and schools refuse to recognize.e
Feature: www.rollingstone.com/culture/cult...
A visualization of average resting heart rate in Germany from 2020 through 2022.
Link: corona-datenspende.github.io/en/vitaldata...
Data: zenodo.org/records/8229...
Link: corona-datenspende.github.io/en/vitaldata...
Data: zenodo.org/records/8229...
October 1, 2025 at 11:52 PM
A visualization of average resting heart rate in Germany from 2020 through 2022.
Link: corona-datenspende.github.io/en/vitaldata...
Data: zenodo.org/records/8229...
Link: corona-datenspende.github.io/en/vitaldata...
Data: zenodo.org/records/8229...
I'd like to announce the medRxiv preprint of our latest work:
A multimodal atlas of COVID-19 severity identifies hallmarks of dysregulated immunity.
www.medrxiv.org/content/10.1...
A multimodal atlas of COVID-19 severity identifies hallmarks of dysregulated immunity.
www.medrxiv.org/content/10.1...
September 22, 2025 at 11:44 PM
I'd like to announce the medRxiv preprint of our latest work:
A multimodal atlas of COVID-19 severity identifies hallmarks of dysregulated immunity.
www.medrxiv.org/content/10.1...
A multimodal atlas of COVID-19 severity identifies hallmarks of dysregulated immunity.
www.medrxiv.org/content/10.1...
Search #Pubmed and view the results on a 2D embedding. Each point represents a paper, and similar papers are near each other. Colors indicate clusters of similar papers.
By Viktor Petukhov
github.com/multicore-ca...
By Viktor Petukhov
github.com/multicore-ca...
September 13, 2025 at 9:59 PM
Search #Pubmed and view the results on a 2D embedding. Each point represents a paper, and similar papers are near each other. Colors indicate clusters of similar papers.
By Viktor Petukhov
github.com/multicore-ca...
By Viktor Petukhov
github.com/multicore-ca...
Reposted by Kamil Slowikowski
AI slop and the destruction of knowledge irisvanrooijcogsci.com/2025/08/12/a...
AI slop and the destruction of knowledge
This week I was looking for info on what cognitive scientists mean when they speak of ‘domain-general’ cognition. I was curious, because the nuances are relevant for something I am researching at t…
irisvanrooijcogsci.com
August 12, 2025 at 10:12 PM
AI slop and the destruction of knowledge irisvanrooijcogsci.com/2025/08/12/a...
1. Make an Excel file with your author information
2. Drag and drop
3. Copy a nicely formatted author list into Word
🐶 slowkow.com/authorbud
2. Drag and drop
3. Copy a nicely formatted author list into Word
🐶 slowkow.com/authorbud
August 8, 2025 at 6:56 PM
1. Make an Excel file with your author information
2. Drag and drop
3. Copy a nicely formatted author list into Word
🐶 slowkow.com/authorbud
2. Drag and drop
3. Copy a nicely formatted author list into Word
🐶 slowkow.com/authorbud
July 16, 2025 at 2:33 PM
Reposted by Kamil Slowikowski
☀️THE SUMMER FIGHT FOR SCIENCE☀️
🫵 WHO: You + all our friends
🧪 WHAT: Share science with your neighbors and tell them about the impact of proposed budget cuts.
🇺🇸 WHERE: Your local community
🏖️ WHEN: Now to Sept 30th
🔬 WHY: The 9/30 budget vote will determine the future of science in America.
🫵 WHO: You + all our friends
🧪 WHAT: Share science with your neighbors and tell them about the impact of proposed budget cuts.
🇺🇸 WHERE: Your local community
🏖️ WHEN: Now to Sept 30th
🔬 WHY: The 9/30 budget vote will determine the future of science in America.
May 14, 2025 at 9:06 PM
☀️THE SUMMER FIGHT FOR SCIENCE☀️
🫵 WHO: You + all our friends
🧪 WHAT: Share science with your neighbors and tell them about the impact of proposed budget cuts.
🇺🇸 WHERE: Your local community
🏖️ WHEN: Now to Sept 30th
🔬 WHY: The 9/30 budget vote will determine the future of science in America.
🫵 WHO: You + all our friends
🧪 WHAT: Share science with your neighbors and tell them about the impact of proposed budget cuts.
🇺🇸 WHERE: Your local community
🏖️ WHEN: Now to Sept 30th
🔬 WHY: The 9/30 budget vote will determine the future of science in America.
Reposted by Kamil Slowikowski
June 4, 2025 at 3:28 PM
Reposted by Kamil Slowikowski
The destruction of the medical research enterprise in the U.S. will go down in history as one of the most damaging choices a government has made in setting its population backwards
www.nytimes.com/interactive/...
www.nytimes.com/interactive/...
Here Are the Nearly 2,500 Medical Research Grants Canceled or Delayed by Trump (Gift Article)
Some cuts have been starkly visible, but the country’s medical grant-making machinery has also radically transformed outside the public eye.
www.nytimes.com
June 4, 2025 at 3:53 PM
The destruction of the medical research enterprise in the U.S. will go down in history as one of the most damaging choices a government has made in setting its population backwards
www.nytimes.com/interactive/...
www.nytimes.com/interactive/...
Reposted by Kamil Slowikowski
Yesterday, the NIH R35 “Outstanding Investigator” grant to fund scientists in my lab studying antibiotic resistance was terminated for reasons not related to the content of the science, or any actions taken by me or members of my lab
May 13, 2025 at 11:37 PM
Yesterday, the NIH R35 “Outstanding Investigator” grant to fund scientists in my lab studying antibiotic resistance was terminated for reasons not related to the content of the science, or any actions taken by me or members of my lab
Reposted by Kamil Slowikowski
Illegal arrests made by the Trump administration are intended to spread fear and silence dissent.
We cannot allow Trump and his cronies to turn the United States of America into an authoritarian society in which people can be disappeared for their political beliefs.
We cannot allow Trump and his cronies to turn the United States of America into an authoritarian society in which people can be disappeared for their political beliefs.
April 30, 2025 at 2:18 AM
Illegal arrests made by the Trump administration are intended to spread fear and silence dissent.
We cannot allow Trump and his cronies to turn the United States of America into an authoritarian society in which people can be disappeared for their political beliefs.
We cannot allow Trump and his cronies to turn the United States of America into an authoritarian society in which people can be disappeared for their political beliefs.
Reposted by Kamil Slowikowski
My colleagues and I demand answers from Kristi Noem and Marco Rubio about the illegal and inhumane abduction of Mohsen Mahdawi, a permanent legal resident of the United States.
The Constitution guarantees people within our borders basic rights, including due process and free speech.
The Constitution guarantees people within our borders basic rights, including due process and free speech.
April 16, 2025 at 8:36 PM
My colleagues and I demand answers from Kristi Noem and Marco Rubio about the illegal and inhumane abduction of Mohsen Mahdawi, a permanent legal resident of the United States.
The Constitution guarantees people within our borders basic rights, including due process and free speech.
The Constitution guarantees people within our borders basic rights, including due process and free speech.
Reposted by Kamil Slowikowski
Kilmar Abrego Garcia must be released and brought home to Maryland. He is innocent. No government can snatch people off the street and ship them to prison without due process. It should terrify us all.
I'm thankful @vanhollen.senate.gov is headed there to demand his release.
I'm thankful @vanhollen.senate.gov is headed there to demand his release.
I just landed in San Salvador a little while ago, and I look forward to meeting with the team at the U.S. embassy to discuss the release of Mr. Abrego Garcia.
I also hope to meet with Salvadoran officials and with Kilmar himself. He was illegally abducted and needs to come home.
I also hope to meet with Salvadoran officials and with Kilmar himself. He was illegally abducted and needs to come home.
Just landed in El Salvador to discuss release of Kilmar Abrego Garcia
YouTube video by Senator Chris Van Hollen
youtube.com
April 16, 2025 at 6:11 PM
Kilmar Abrego Garcia must be released and brought home to Maryland. He is innocent. No government can snatch people off the street and ship them to prison without due process. It should terrify us all.
I'm thankful @vanhollen.senate.gov is headed there to demand his release.
I'm thankful @vanhollen.senate.gov is headed there to demand his release.
Reposted by Kamil Slowikowski
"It is critically important that we as Americans, regardless of party, stand up for all of these students who are being detained," says Vermont's @balint.house.gov. "This has got to stop. This is Trump creating his own army of brownshirts right here in our country."
April 16, 2025 at 12:33 PM
"It is critically important that we as Americans, regardless of party, stand up for all of these students who are being detained," says Vermont's @balint.house.gov. "This has got to stop. This is Trump creating his own army of brownshirts right here in our country."
