Alice Kane
@alicekane.bsky.social
230 followers 250 following 7 posts
Ling/Obrzut Assistant Professor at the Institute for Systems Biology (ISB) in Seattle. Originally from Australia, now in the US. Interested in frailty, aging, epigenetics and mouse models.
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Reposted by Alice Kane
naehasubramanian.bsky.social
Why do current diagnostics struggle to detect Lyme disease? Our new preprint reveals highly localized immune responses: tissue and vascular responses dominate, while peripheral activation is minimal.
www.biorxiv.org/content/10.1...
#LymeDisease #Multiomics #Immunology
A thread ⬇️
Multiomics Reveals Compartmentalized Immune Responses and Tissue-Vascular Signatures in Lyme Disease
Lyme disease (LD) is growing in incidence, with nearly 500,000 cases diagnosed annually in the United States. Despite treatment, some patients experience persistent symptoms. The immune mechanisms underlying LD remain poorly understood. We conducted a multiomic longitudinal analysis of 49 LD patients and matched controls, integrating plasma proteomics, metabolomics, PBMC immunophenotyping, and a meta-analysis of skin lesions. We identified compartmentalized immune responses in acute LD, with coordinated alterations in circulating plasma proteins and metabolites linked to endothelial barrier stability, metabolic reprogramming, and symptom severity, predominantly traced to tissue and vascular immune processes at the site of infection. In contrast, PBMCs remained largely quiescent, revealing a disconnect between localized tissue responses and systemic immunity. These findings provide novel insights into LD pathophysiology and highlight the potential for diagnostics leveraging tissue and vascular immune markers detectable in blood. They also provide a resource for biomarker discovery and predictive modeling to improve LD management. ### Competing Interest Statement CR, AB, HH, LP, MEB, DC, CL, ASA, BS, KS, PT, KW, NR, LH, and NS declare no competing financial interests. GPW reports receiving research grants from Biopeptides Corp., has served as an expert witness in malpractice cases involving Lyme disease, and is an unpaid board member of the non-profit American Lyme Disease Foundation. United States Department of Defense, https://ror.org/0447fe631, W81XWH2110664 Wilke Family Foundation Steven and Alexandra Cohen Foundation Global Lyme Alliance, https://ror.org/05tzrqq19
www.biorxiv.org
Reposted by Alice Kane
isbscience.org
ISB @isbscience.org · Apr 8
This Friday, 11:30-1 and in-person, @isbscience.org's @alicekane.bsky.social will present The Biology of Aging: Bridging Frailty and Health Outcomes, offering insights into how aging affects health & function. Register: www.eventbrite.com/e/2024-2025-...
Reposted by Alice Kane
annikabarber.bsky.social
Wondering if your study section cancelled? I update this sheet daily. As of today, 56/124 study sections that should have met since Jan 2, 2025 have "not met as scheduled." docs.google.com/spreadsheets...
2025 Study section tracking
docs.google.com
alicekane.bsky.social
Data request! Do you assess frailty index in your aging C57 mouse studies? @dantong-zhu.bsky.social is making new and improved clocks to predict age and lifespan based on frailty data & we aim to validate widely! Reach out if you want to collaborate 🐀👵⏰ Especially if you have female data + lifespan!
Reposted by Alice Kane
gibbological.bsky.social
Introducing "Metagenomic Estimation of Dietary Intake", or "MEDI": a data-driven approach to estimating dietary and nutritional intake from stool DNA 💩 - 🍌🥦🐟🥩📈

See @cdiener.com's excellent thread below.

We are really proud of this work, and we hope it is useful to the scientific community.
cdiener.com
Happy to announce that MEDI, our method to quantify dietary intake through metagenomics is out now. 🧬 🧪🧫🦠 www.nature.com/articles/s42...

#metagenomics #microbiome #microbiomesky

So what is MEDI? A combination of two things:
Metagenomic estimation of dietary intake from human stool - Nature Metabolism
Diener et al. present a method that allows the estimation of dietary intake from human stool by detecting food-derived DNA in faecal metagenomes.
www.nature.com
Reposted by Alice Kane
cdiener.com
Happy to announce that MEDI, our method to quantify dietary intake through metagenomics is out now. 🧬 🧪🧫🦠 www.nature.com/articles/s42...

#metagenomics #microbiome #microbiomesky

So what is MEDI? A combination of two things:
Metagenomic estimation of dietary intake from human stool - Nature Metabolism
Diener et al. present a method that allows the estimation of dietary intake from human stool by detecting food-derived DNA in faecal metagenomes.
www.nature.com
Reposted by Alice Kane
gibbological.bsky.social
Interested in doing a PhD in Austria focused on understanding how to engineer the composition of the gut microbiota?

Want to work with a brilliant computational biologist and microbiome researcher?

See below!
Reposted by Alice Kane
americanaging.bsky.social
The Dog Aging Project is an innovative research initiative that brings together a community of dogs, owners, veterinarians, researchers, and volunteers to carry out the most ambitious canine health study in the world.
dogagingproject.org
Reposted by Alice Kane
americanaging.bsky.social
🌟 Join us in Anchorage, Alaska for the AGE 53rd Annual Meeting: New Frontiers in Aging Research! 🌟

This is an event you won’t want to miss!

📅 Save the Date & Be Part of the Conversation!
Reposted by Alice Kane
bbparis1984.bsky.social
Biological sex is a key modifier of #aging phenotypes, including #Brain 🧠 aging.
See this piece out today in #Neuron, spearheaded by @denadubal.bsky.social, co-authored by #YousinSuh, @ctmurphy1.bsky.social and myself on the topic:
www.sciencedirect.com/science/arti...
#GeroSky #SexDifferences
Biological sex matters in brain aging
alicekane.bsky.social
So so helpful, thank you!
alicekane.bsky.social
Looking to hire a postdoc who is excited about epigenetics and aging! ISB is an incredible place to work, and Seattle is great! Plus Washington postdoc salaries are 👌 Come join us! isbscience.hrmdirect.com/employment/j...
isbscience.hrmdirect.com