@erzbergerlab.bsky.social
1.2K followers 2.3K following 33 posts
Studying ribosomes at UT Southwestern
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Reposted
events.embl.org
Nothing like a coffee break to fuel great conversations ☕✨ Our #EMBLProtein participants are connecting and recharging after the first half of session 1 'Ribosome, elongation, and termination'.
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events.embl.org
Starting Session 2 'Quality control' strong!

🎙️Oliver Mühlemann opens with 'Deciphering the role of the deubiquitinase USP9X in ribosome-associated quality control' at #EMBLProtein.
Reposted
events.embl.org
We’re back! 🥳

Kicking off our first conference after the summer break: 'Protein synthesis and translational control'.

🌟Today’s highlights include keynote lectures from Lori Passmore, Reuven Agami, and Marina Rodnina.

Welcome to #EMBLProtein! 🎉
Reposted
jbquerido.bsky.social
Finally out!
I’m thrilled to share our new paper (Wolin et al., Cell 2025).

This paper describes SPIDR, a high-throughput method for mapping RBP binding sites.

By combining #SPIDR with #cryoEM, we identified the exact binding site of LARP1 within the #mRNA channel of the 40S ribosomal subunit.
Reposted
cp-trendsbiochem.bsky.social
📣 Online now - the Review "The ribosome ubiquitination code: fine-tuning translation under stress" from
Haleigh Wooters, Neil Nimmagadda, Alicia Darnell, and @thesilvalab.bsky.social .

#Ubiquitination #TranslationalReprogramming #StressResponse

Read it here: authors.elsevier.com/a/1lPPS3S6Gf...
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thebanlab.bsky.social
New paper out in Mol Cell, where we show how N-myristolytransferases lipidate proteins on the translating ribosome!
Continuing our successful collaboration with DeuerlingLab @uni-konstanz.de & Shu-ou Chan @caltech.edu
@snsf.ch @ethz.ch
www.cell.com/molecular-ce...
Reposted
science.org
With the help of a technique called Massively Parallel Ribosome Profiling, researchers in Science have identified more than 4000 open reading frames—stretches of genetic material that can encode proteins—across 679 human-associated viral genomes. scim.ag/43RoAdF
Pan-viral ORFs discovery using massively parallel ribosome profiling
Defining viral proteomes is crucial to understanding viral life cycles and immune recognition but the landscape of translated regions remains unknown for most viruses. We have developed massively para...
scim.ag
Reposted
beckmannlab.bsky.social
We are happy to share that our snR30 story is finally out in @natureportfolio.nature.com 🥳 We report the first structure of a H/ACA snoRNP acting in ribosome synthesis thereby providing a detailed structural and biochemical view of the snR30 snoRNP guiding local 18S rRNA subdomain folding. 👇👇👇
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scicambridge.bsky.social
This September, join the EMBO Workshop at Churchill College in Cambridge, hosted by an EMBO organising committee including our Affiliate PI Professor Alan Warren.

Abstracts to present are due 12 June, and registration closes 22 August.

Find more info here: tinyurl.com/ribosomesynt...
Poster: EMBO Workshop. Ribosome Synthesis: From Mechanisms to Therapy 13th Edition. Churchill College, Cambridge, UK. Sunday 7th-Friday 12th September 2025. EMBO-funded event.
Reposted
kkmurray.bsky.social
(BioRxiv All) The alternative initiation factor eIF2A regulates 40S subunit turnover in ribosome-associated quality control: The noncanonical translation initiation factor eIF2A plays critical roles in diverse cellular processes, including the integrated stress response,… #BioRxiv #MassSpecRSS
The alternative initiation factor eIF2A regulates 40S subunit turnover in ribosome-associated quality control
The noncanonical translation initiation factor eIF2A plays critical roles in diverse cellular processes, including the integrated stress response, neurodegeneration and tumorigenesis. However, the precise molecular mechanism underlying eIF2A`s function remains poorly understood. Here, we exploit a TurboID-based proximity labeling combined with mass spectrometry to systematically map the interactome of eIF2A during homeostasis and stress. Combining polysome gradients with TurboID, we zoom into the interactions of eIF2A with the 40S small ribosomal subunit and map the eIF2A binding site close to the mRNA entry channel. We identify a network of interactors that link eIF2A to ribosome-associated quality control, including its strong interaction with G3BP1-USP10 complexes as well as RPS2 and RPS3. In the absence of eIF2A, RPS2 and RPS3 ubiquitination is diminished specifically upon ribosome stalling. 40S-specific footprinting in eIF2A knockout cells shows minimal changes in 5`UTR occupancy, consistent with a limited role for eIF2A in translation initiation. Using dynamic SILAC mass spectrometry, we characterize the novel function of eIF2A in ribosome-associated quality control and show that eIF2A antagonizes USP10-dependent rescue of 40S ribosomes, resulting in altered turnover of 40S subunits upon cellular stress. Collectively, our study identifies a previously unknown link between eIF2A and ribosome-associated quality control, implies that eIF2A promotes translation fidelity by tuning 40S ribosome rescue under stress and warrants further investigations into the role of ribosome-associated quality control in tumorigenesis.
dlvr.it
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natmethods.nature.com
A Review from experts in cryo-EM and X-ray crystallography describes the latest and greatest strategies for time-resolved structural biology.

www.nature.com/articles/s41...
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dijiang319.bsky.social
🧬🦠🧫 @science.org RNA-mediated CRISPR-Cas13 inhibition through crRNA structural mimicry | Science www.science.org/doi/10.1126/... meeskelab.org bit.ly/sustecheducnJiaLab #CRISPR #RNA
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jortegamcgill.bsky.social
There is one day left before early bird registration closes for the Ribosome Synthesis meeting in Cambridge, UK, on September 7-12, 2025. Great lineup of speakers. Generous child care grants are available for attendees. Check under the 'Funding' tab.

www.eventsforce.net/hg3/frontend...