Nilesh Banavali
@nilesh-banavali.bsky.social
130 followers 150 following 99 posts
Research Scientist, Molecular dynamics, Cryo-EM, Ribosomes, Antibiotics, Nucleic acid structure and dynamics, Biochemical reaction mechanisms, Protein splicing
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Reposted by Nilesh Banavali
doudna-lab.bsky.social
Congratulations to my colleagues Omar Yaghi and John Clarke — the two latest UC Berkeley Nobel Laureates! Omar’s development of metal-organic frameworks changed the way we capture carbon, store energy, and harvest water from desert air. shorturl.at/GpBsu 1/2
UC Berkeley’s Omar Yaghi shares 2025 Nobel Prize in Chemistry - Berkeley News
Yaghi created a field called reticular chemistry, which involves stitching together molecular building blocks to form porous structures — metal-organic frameworks (MOFs) — with myriad applications.
shorturl.at
Reposted by Nilesh Banavali
cryoempapers.bsky.social
ANTIDOTE: A Metadata-Driven Neural Network for Improving CryoEM 3-D Particle Sorting www.biorxiv.org/content/10.1101/2025.10.06.680814v1 #cryoem
Reposted by Nilesh Banavali
Reposted by Nilesh Banavali
whiskeynachos.bsky.social
Thank you to the Alaska Raptor Center for telling the truth that birders already knew: every bald eagle cry you hear in an advertisement is a red-tailed hawk.
Reposted by Nilesh Banavali
neorsd.org
I’m a sewage system. I also have a great personality.
Elizabeth Jacobs, PhD
@elizabethjacobs.bsky.social
I'm an epidemiologist. Sewage systems are sexy.

Dosco Jones @doscojones.bsky.social
I'm an engineer. Sewage systems are sexy.
Reposted by Nilesh Banavali
cryoempapers.bsky.social
KNexPHENIX: A PHENIX-Based Workflow for Improving Cryo-EM and Crystallographic Structural Models www.biorxiv.org/content/10.1101/2025.10.02.680106v1 #cryoem
Reposted by Nilesh Banavali
Reposted by Nilesh Banavali
lucas.farnunglab.com
New week, new tool: Find our Protein Domain Designer tool to generate publication-ready protein domain diagrams here: domaindesigner.farnunglab.com
Protein Domain Designer tool for the generation of publication-ready protein domain diagrams
Reposted by Nilesh Banavali
olibclarke.bsky.social
This MRC course (and the references therein) is a great place to start. But it is a very broad topic - if you are looking to target e.g. membrane proteins, enzymes, RNA binding proteins you might get more specific sets of recommendations.

youtube.com/playlist?lis...
2023 Cryo-EM Course - YouTube
Held at the MRC Laboratory of Molecular Biology, the 2023 Cryo-EM Course offers insights into several aspects of electron cryo-microscopy. This includes disc...
youtube.com
Reposted by Nilesh Banavali
Reposted by Nilesh Banavali
nytimes.com
Health officials are investigating whether the mosquito-borne virus chikungunya is circulating in New York after a woman tested positive on Long Island in a preliminary screening. The last time the debilitating disease was known to have been transmitted locally in the U.S. was about a decade ago.
Mosquito-Borne Illness Rarely Seen in U.S. Is Suspected on Long Island
Chikungunya, which is endemic in parts of South America, Africa and Asia, may be the cause of a woman’s illness.
nyti.ms
Reposted by Nilesh Banavali
elife.bsky.social
🌱 Using ‘compelling’ methods, including #CryoET, researchers mapped spinach thylakoid membranes at single-molecule precision, revealing how photosynthetic complexes are organised and settling long-standing debates on chloroplast architecture.
buff.ly/j3TSIkn
Reposted by Nilesh Banavali
computingcaitie.bsky.social
I am excited to share our new preprint on the CAGE complex, a mysterious hollow protein complex that I first saw years ago while surveying Tetrahymena ciliary lysate www.biorxiv.org/content/10.1... #cilia #protistsonsky 🧬🧪
Reposted by Nilesh Banavali
baylinklab.bsky.social
You’ve heard of #Lymedisease, but have you ever seen the bacteria that causes it? 🦠 Borrelia burgdorferi, the spiral-shaped culprit transmitted by ticks, swims with a creepy wriggling motion and uses #chemotaxis to navigate. Both fascinating... and disgusting #Microsky 🧪 #IDsky @shawlab.bsky.social
Reposted by Nilesh Banavali
Reposted by Nilesh Banavali
harrywilliams.bsky.social
❄️ NEW PRE-PRINT ❄️ Happy to see our latest work online. Here we present a super simple solution to the preferred orientation problem in single particle cryo-EM: the use of ultrasonic excitation during vitrification! Details in the 🧵 below... #cryoEM #structuralbiology
biorxiv-biophys.bsky.social
Overcoming Preferred Orientation in Cryo-EM With Ultrasonic Excitation During Vitrification https://www.biorxiv.org/content/10.1101/2025.09.14.676144v1
Reposted by Nilesh Banavali
kekexinz.bsky.social
🚀 Check out our new preprint on extending the scope of single-particle cryo-EM with 2D template matching!
Improved cryo-EM reconstruction of sub-50 kDa complexes using 2D template matching is now available on bioRxiv!
www.biorxiv.org/content/10.1...
Reposted by Nilesh Banavali
csmfht.bsky.social
Sometimes it's nice to remember that even Marcus Aurelius was like "you don't have to comment on everything bro"
Reposted by Nilesh Banavali
in-otter-news.bsky.social
I just find everything feels a bit better when I watch this.