Jenni Prokkola
@jmprok.bsky.social
960 followers 520 following 130 posts
Salmon scientist and an angry optimist. Evolution & Physiology 🐟🌡️🧬 Senior scientist & Research Fellow @luke.fi. Lohitutkija. She/her.
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jmprok.bsky.social
I was always hoping there was a way to find the salmonid scientists on here easily. Now there is! Please comment to be added, it is (very) incomplete 🙏
#salmon #FishSci

go.bsky.app/GSn7fKy
Reposted by Jenni Prokkola
jpverta.bsky.social
One week to apply for our fully funded PhD position in Norway! This is a really exciting project in collab. with University of Helsinki and Benchmark Genetics.

Samples are ready - you do (read: learn) everything - functional genomics, bioinformatics, genotype-phenotype associations 🤩

Please RT!
jpverta.bsky.social
How do regulatory genes control alternative life histories? We have an open PhD position to answer this question using functional genomics in Atlantic salmon.

Apply by October 15th through www.jobbnorge.no/en/available...

Please share widely! 🧬🦑🖥️
Reposted by Jenni Prokkola
juliakemppinen.bsky.social
One week to go! I am recruiting a postdoc, call ends October 7 🍃🌿☘️ In ecology, University of Helsinki is the leading university in Finland and the Nordics and the fifth-best in Europe (ShangaiRanking's 2024). And for 8 years in a row, Finland is still the happiest country in the world :-)
juliakemppinen.bsky.social
I am recruiting a postdoctoral researcher to conduct experiments on tundra plants and microclimates 🌱🌡️💧❄️ Call ends October 7! jobs.helsinki.fi/job/Helsinki...
Postdoctoral Researcher, Biodiversity Change
Postdoctoral Researcher, Biodiversity Change
jobs.helsinki.fi
Reposted by Jenni Prokkola
tomassjoblom.bsky.social
Tämä ei ole hyvän mielen postaus, mutta ehkä syksyn tärkein postaukseni. Suosittelen kaikille tutkijoille ja tutkimusryhmille: käsitelkää törkyriskejä ja suunnitelkaa toimenpiteitä etukäteen yhdessä.

Lähiaikoina on tiettävästi odotettavissa törkyä tiedeyhteisöä kohtaan. Ketjusta muutama pikavinkki.
Reposted by Jenni Prokkola
jpverta.bsky.social
Surprise 🤗 So many uncharacterized transcripts in Atlantic salmon, including super interesting long non-coding RNAs!

Proud to share the 1st publication of Xindi Huang:

link.springer.com/article/10.1...

With @fishcongen.bsky.social

🖥️🧬🦑
A comprehensive analysis of Atlantic salmon gonad and pituitary transcriptomes identifies novel players in sexual maturation - BMC Genomics
Sexual maturation is a key developmental process important for reproductive success. Understanding the molecular mechanisms behind variation in sexual maturation can provide insights into reproductive biology and how life history variation is encoded in the genome. Atlantic salmon (Salmo salar) has become an excellent sexual maturation research model due to its diversity of life history strategies and its ecological and economic importance. A major challenge has been the lack of a comprehensive transcriptional investigation of reproductive tissues that captures the dynamic transcriptional changes across individuals, tissues, and developmental stages. Long non-coding RNAs (lncRNAs) also play crucial roles in maturation, yet their functions in salmon maturation remain underexplored. In this study, we sequenced 98 transcriptomes and found substantial transcriptomic complexity in the gonad and pituitary tissues of Atlantic salmon. We identified transcripts corresponding to 2,364 putative newly characterized protein-coding genes and 4,421 putative long intergenic non-coding RNAs (lincRNAs), many with tissue-specific expression. Gene co-expression network analysis (WGCNA) revealed tissue-specific gene network modules, linked to GO terms including Wnt signaling in immature testis, lipid metabolism, and cilia assembly in mature testis, ribosome biogenesis and DNA repair in the ovary, and hormone activity in pituitary. We identified new copies of known genes, such as gh1, pou3f2, and ier5 associated with the regulation of gonadal and pituitary functions. Some lncRNAs and their nearest genes showed correlated expression within modules, suggesting potential regulatory roles. Candidate lincRNAs indicated cis-acting regulatory potential on genes like tnfrsf11b and fgl1, which are implicated in immune privilege during gonadal development and sperm quality control. Our study provides a comprehensive transcriptomic analysis of Atlantic salmon gonad and pituitary tissues, significantly improving the functional annotation of the Atlantic salmon genome. These findings reveal key regulatory pathways and novel molecular players involved in sexual maturation, particularly in the testis. Importantly, our study highlights the regulatory potential of lncRNAs in reproductive biology and maturation age variation, advancing our understanding of the molecular mechanisms governing sexual maturation. They further unlock future gene expression analyses and regulatory network reconstruction for dissecting the roles of lncRNAs in Atlantic salmon life history variation.
link.springer.com
Reposted by Jenni Prokkola
daninyqvist.bsky.social
New review paper titled "Balancing hydropower production and ecology - ecological impacts, mitigation measures, and programmatic monitoring" published in KMAE. With @jnaslund.bsky.social and others. Read it here: www.kmae-journal.org/articles/kma...
Reposted by Jenni Prokkola
beebrookshire.bsky.social
Some people think ChatGPT has a place writing things like news briefs, stuff written to a specific style and tone and, y'know, kinda boring.

So Science did a study.

ChatGPT failed.

Why? It got stuff wrong. "Also, extensive editing for hyperbole was needed." www.science.org/content/blog...
Can ChatGPT help science writers?
www.science.org
Reposted by Jenni Prokkola
jaakkoerkinaro.bsky.social
Two new papers about diversity and genetic structure of Atlantic salmon populations in two sub-arctic rivers in the northernmost Finland and Norway

doi.org/10.1007/s105...

doi.org/10.1111/jfb....

@fishcongen.bsky.social
@andersfoldvik.bsky.social @alamarins.bsky.social
@luke.fi @helsinki.fi
Reposted by Jenni Prokkola
bsky.app
Bluesky @bsky.app · Sep 3
You can now add people to a Starter Pack directly from their profile.

Starter Packs make it easy to recommend accounts to follow. They already drive nearly 20% of all follows on Bluesky!
A screenshot of the profile menu with "Add to starter pack" highlighted
Reposted by Jenni Prokkola
longplay.fi
Talouspoliittisesta keskustelusta puuttuu jälleen kerran politiikka, tuskailee @pulsa.fi tämän viikon Perjantaikirjeessä. Käydään kirjanpitoharjoitusta, kun samalla vallankäyttö, kaiken politiikan ydin, jää sivuosaan.

Suosittu kirje Long Playn tilaajille: longplay.fi/tilaa
Long Playn kirje: Pitäisikö välillä puhua myös politiikkaa?
"Malli käytännössä estäisi osaa puolueista harjoittamasta politiikkaa, jonka varaan ne ovat kannatuksensa rakentaneet."
mailchi.mp
Reposted by Jenni Prokkola
jpverta.bsky.social
How do regulatory genes control alternative life histories? We have an open PhD position to answer this question using functional genomics in Atlantic salmon.

Apply by October 15th through www.jobbnorge.no/en/available...

Please share widely! 🧬🦑🖥️
jmprok.bsky.social
Added! Have not searched for more people lately but there is room for sure.
jmprok.bsky.social
It sounds like you can’t miss it:)
Reposted by Jenni Prokkola
jmprok.bsky.social
🔈 🐟❓🎣
Save the date for an exciting event next summer! Our symposium, co-sponsored by @icesmarine.bsky.social, is titled Habitat restoration for diadromous fishes – best practices and impacts on stock assessment

Date: 30 June - 2 July 2026

Website: lnkd.in/dBwSC_cV

@luke.fi @unioulu.bsky.social
A brochure of the symposium with salmon filmed under water on the cover and a small eel on the second page. The title of the sympisium is Habitat restoration for diadromous fishes – best practices and impacts on stock assessment. It will be organised in Oulu, Finland, 30 June - 2 July 2026. Please see details on the website.
jmprok.bsky.social
🔈 🐟❓🎣
Save the date for an exciting event next summer! Our symposium, co-sponsored by @icesmarine.bsky.social, is titled Habitat restoration for diadromous fishes – best practices and impacts on stock assessment

Date: 30 June - 2 July 2026

Website: lnkd.in/dBwSC_cV

@luke.fi @unioulu.bsky.social
A brochure of the symposium with salmon filmed under water on the cover and a small eel on the second page. The title of the sympisium is Habitat restoration for diadromous fishes – best practices and impacts on stock assessment. It will be organised in Oulu, Finland, 30 June - 2 July 2026. Please see details on the website.
Reposted by Jenni Prokkola
ulfbergstrom.bsky.social
Come work with us! 2-year postdoc position open at SLU Aqua, on the role of herring in coastal food webs of the Baltic Sea. Applications due August 25.

www.slu.se/om-slu/jobba...
Reposted by Jenni Prokkola
Reposted by Jenni Prokkola
veramikkila.bsky.social
Nyt todellakin nähdään, ovatko sivistyspuolueina itseään pitävät tosissaan.

Erityisen mielenkiintoista on lisäksi nähdä, ovatko puheet kasvun tavoittelusta totta. Kansantaloudesta mitään ymmärtävät lienevät yksimielisiä siitä, että TKI-panostukset ovat kasvun tärkein avain.
Lukijan mielipide | Nyt mitataan kokoomuksen ja Rkp:n sivistys- ja kilpailukykypuheet
Sen sijaan että puhutaan leikkaamisesta, pitäisi puhua siitä, kuinka paljon yliopistot ja Suomen Akatemia tarvitsisivat lisärahoitusta.
www.hs.fi
Reposted by Jenni Prokkola
jmprok.bsky.social
Never know what you find in your citations! I found an obviously wrong citation in a publication from a completely different field. Anyone reading the reference list should have spotted it 😬 Emailed the journal, hope I’ll be positively surprised…
Reposted by Jenni Prokkola
jutfelt.bsky.social
The Kristineberg Underwater Observatory is now live!! 🐟🧪🦑
Similar to the @coralcitycamera.bsky.social.

Watch the eel grass meadow full of life live from your desk! Gobies, crabs, pipefish, several species of wrasses including some massive Ballan wrasse. Enjoy!
www.youtube.com/live/goB60IJ...
Reposted by Jenni Prokkola
mikarantane.bsky.social
20 straight days with 30 °C in Finland! Truly unprecedented heatwave still in full swing with maximum today about 32-33 degrees.

Even the Arctic regions (e.g. Sodankylä Tähtelä) have seen three weeks above 25 °C, and may rival tomorrow their August heat records.
Forecast 2-m temperatures today in Finland, based on the MEPS regional model.