Kelly Sovacool
@kelly.sova.cool
1.1K followers 1.7K following 180 posts
Bioinformatics Software Engineer. PhD from Schloss Lab at UMich. https://sovacool.dev 🏃🏻‍♀️🚴🏻‍♀️🧗🏻‍♀️ #python #rstats #nextflow #snakemake she/her My views are my own.
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Reposted by Kelly Sovacool
itativcs.bsky.social
and before, "but itati, what else are we supposed to do?" you are supposed to counter organize. you are supposed to pressure your universities to stop accruing capital in endowments and use that money to actually invest in itself and not football. You are supposed to engage in conflict.
kelly.sova.cool
The hevea butcher block of social media handles, perhaps?
kelly.sova.cool
I’m at #USRSE25 this week! Not presenting anything this year but happy to chat with anyone about software dev for genomics research!

#opensource #openscience #bioinformatics #genomics
us-rse.bsky.social
🚀 Countdown mode: T-minus 6 days until research software engineers land in Philadelphia!

🔗 Check out the full program at us-rse.org/usrse25/prog...

#usrse25 #ResearchSoftware #RSE #OpenScience #MachineLearning #AI #ResearchComputing #HPC
Reposted by Kelly Sovacool
dccc-phd.bsky.social
::waves 'ISO 8601' flag::
arrianna-planey.bsky.social
IME, developng your own system for organizing files to reduce reliance on search functions includes:

- file naming conventions (consistency & ability to sort file versions quickly = key)
- nesting subfolders within project/course folders according the logical flow of your work process
Reposted by Kelly Sovacool
thomasp85.com
🎨 Theming got a huge overhaul with the latest #ggplot2 release. In honour of that @teunbrand.bsky.social has written a comprehensive deep-dive into styling your plots, covering both old and new functionality. Grab a coffee and dive in!

#rstats
ggplot2 styling
This post discusses one function in ggplot2: `theme()`. Find out about the glamour of graphics in this deep-dive article.
www.tidyverse.org
Reposted by Kelly Sovacool
kelly.sova.cool
Can again confirm this simple step improves meal enjoyment at least 3 fold

Bonus points if you spatchcock the chicken and make a pun about spineless cowards!
kelly.sova.cool
An important overlooked step when preparing to roast a chicken is chasing your loved one(s) around the house with it
kelly.sova.cool
Got my natural immunity boosting wellness injections!
(flu + covid vaccine)
Reposted by Kelly Sovacool
carlbergstrom.com
I like this. Since under RFK Jr, Covid shots are now for people with underlying conditions that put them at risk, Michigan’s chief medical executive Dr. Natasha Bagdasarian states that not having the most recent Covid shot constitutes such an underlying condition.

www.michigan.gov/mdhhs/inside...
In her recommendation, Bagdasarian stated,
"Any person over the age of six months without contraindication who has not received a dose of a Food and Drug Administration (FDA)-approved or-authorized 2025-2026 COVID-19 vaccine may be considered to have an underlying condition that puts them at high risk for severe outcomes from COVID-19 and is thus eligible to receive an age-appropriate dose."
kelly.sova.cool
Also see a closely related cousin: “fix(docker): don’t know why but this works now”
kelly.sova.cool
it's been one of those days...
A screenshot of a git commit that says "ci(docker): throw spaghetti at the wall". Sometimes, the only thing you can do to make a docker recipe build successfully is throw spaghetti at the wall and see what sticks.
Reposted by Kelly Sovacool
olivia.science
Finally! 🤩 Our position piece: Against the Uncritical Adoption of 'AI' Technologies in Academia:
doi.org/10.5281/zeno...

We unpick the tech industry’s marketing, hype, & harm; and we argue for safeguarding higher education, critical
thinking, expertise, academic freedom, & scientific integrity.
1/n
Abstract: Under the banner of progress, products have been uncritically adopted or
even imposed on users — in past centuries with tobacco and combustion engines, and in
the 21st with social media. For these collective blunders, we now regret our involvement or
apathy as scientists, and society struggles to put the genie back in the bottle. Currently, we
are similarly entangled with artificial intelligence (AI) technology. For example, software updates are rolled out seamlessly and non-consensually, Microsoft Office is bundled with chatbots, and we, our students, and our employers have had no say, as it is not
considered a valid position to reject AI technologies in our teaching and research. This
is why in June 2025, we co-authored an Open Letter calling on our employers to reverse
and rethink their stance on uncritically adopting AI technologies. In this position piece,
we expound on why universities must take their role seriously toa) counter the technology
industry’s marketing, hype, and harm; and to b) safeguard higher education, critical
thinking, expertise, academic freedom, and scientific integrity. We include pointers to
relevant work to further inform our colleagues. Figure 1. A cartoon set theoretic view on various terms (see Table 1) used when discussing the superset AI
(black outline, hatched background): LLMs are in orange; ANNs are in magenta; generative models are
in blue; and finally, chatbots are in green. Where these intersect, the colours reflect that, e.g. generative adversarial network (GAN) and Boltzmann machine (BM) models are in the purple subset because they are
both generative and ANNs. In the case of proprietary closed source models, e.g. OpenAI’s ChatGPT and
Apple’s Siri, we cannot verify their implementation and so academics can only make educated guesses (cf.
Dingemanse 2025). Undefined terms used above: BERT (Devlin et al. 2019); AlexNet (Krizhevsky et al.
2017); A.L.I.C.E. (Wallace 2009); ELIZA (Weizenbaum 1966); Jabberwacky (Twist 2003); linear discriminant analysis (LDA); quadratic discriminant analysis (QDA). Table 1. Below some of the typical terminological disarray is untangled. Importantly, none of these terms
are orthogonal nor do they exclusively pick out the types of products we may wish to critique or proscribe. Protecting the Ecosystem of Human Knowledge: Five Principles
Reposted by Kelly Sovacool
courtneymilan.com
I get called radical because I want affordable housing and rational, compassionate immigration policy and gun reform that helps keep kids safe.

Radicals like me are never going to kill people for our ideology because that’s literally not our ideology.
Reposted by Kelly Sovacool
irisvanrooij.bsky.social
This is my impression too. The poorer our critical thinking skills, the less opposition there can be to fascist and autocratic power.
jrosenbaum.com.au
My tin foil hat theory is that people in power are investing so heavily in it because they want us using LLMs so that we are worse at critical thinking.
Reposted by Kelly Sovacool
courtneymilan.com
I feel like the last 48 hours have just been the entire world going full NYT Pitchbot.

"Whether it's the people on the right saying we should shoot everyone on the left as terrorists, or the people on the left saying we should give everyone on the right health care, both sides are---"
Reposted by Kelly Sovacool
darthbluesky.bsky.social
i wrote this post in july two years ago when blue sky had around 200,000 total users and i thought i would ask again

tell me what u are doing
be proud of what u do and share it here
darthbluesky.bsky.social
tell me what u are doing
be proud of your work and share it here
ihavethatonvinyl.com
hearing that we're not supposed to be promoting our stuff on here? seen a couple of posts disparaging that practice. still have no idea what this place is about, what is ok to post or not post, feeling like i'm dog paddling here
Reposted by Kelly Sovacool
audreydrotos.bsky.social
Excited to be featured in today’s @nature.com article about scientists standing up to Trump. I’ve never been one to sit on the sidelines, especially when something I believe so deeply in—science funding that saves lives—is under attack. Read more here: www.nature.com/articles/d41...
Reposted by Kelly Sovacool
bnwolford.bsky.social
Really grateful to be part of a community of "helpers" & thanks to @nature.com for highlighting!

www.nature.com/articles/d41...
Reposted by Kelly Sovacool
bmaher.bsky.social
Inspired by Fred Rogers, @nature.com asked readers to help us 'find the helpers' amid the crisis in American science. What emerged were inspiring stories of researchers, legal experts, data hounds and government scientists who are fighting the dismantling of the US research enterprise. 🧪🧵1/6
Reposted by Kelly Sovacool
robp.bsky.social
More of "The AI Coming For Us". Well, one way it's going to take us out is if the next generation of folks relies on this slop for anything serious ....
robert.bio
"The reference genome is essentially folded using the BWT, which allows the search for read alignments to take on a bow-tie shape in the index"

Hmmm... @benlangmead.bsky.social
kelly.sova.cool
Periodic reminder not to use LLMs to ask questions for which you don't know how to verify the answer!
robert.bio
"The reference genome is essentially folded using the BWT, which allows the search for read alignments to take on a bow-tie shape in the index"

Hmmm... @benlangmead.bsky.social
kelly.sova.cool
Of course I had to make a shiny app to compare operating costs of any internal combustion engine vehicle vs electric vehicle

kelly-sovacool.shinyapps.io/car-costs/
Car Costs
kelly-sovacool.shinyapps.io
kelly.sova.cool
There are so few new cars with a manual available in the US anymore. And now that EVs are becoming more affordable, it just doesn't make much financial sense either to get a manual -- in addition to environmental concerns of conventional ICEs.