Nick Doiron
@mapmeld.bsky.social
maps, travel, i18n, ML
he/him
🇨🇶
he/him
🇨🇶
Pinned
Nick Doiron
@mapmeld.bsky.social
· Nov 16
Plant-Based LLMs
mapmeld.com
Started setting up a table of "Plant-Based LLMs", meaning they're trained in part on plant genomes or proteomes mapmeld.com/plant-based-llms/
Adding to my southwest invasive species mini-docs, tumbleweed (Russian Thistle version)
www.youtube.com/watch?v=UpnY...
www.youtube.com/watch?v=UpnY...
Tumbleweed: the origins of Russian Thistle
YouTube video by LeafHack
www.youtube.com
December 21, 2025 at 1:39 PM
Adding to my southwest invasive species mini-docs, tumbleweed (Russian Thistle version)
www.youtube.com/watch?v=UpnY...
www.youtube.com/watch?v=UpnY...
my thoughts are with whoever still has WinResearcher (very old Burmese encoding) to convert to Unicode 10 years later
December 20, 2025 at 5:55 PM
my thoughts are with whoever still has WinResearcher (very old Burmese encoding) to convert to Unicode 10 years later
Reposted by Nick Doiron
🌱💼 #JobAlert: We’re Hiringa Climate Justice Fellow
Starting September 2026, the Sabin Center for Climate Change Law is seeking a fellow to support climate justice research, advocacy, policy work, resource development, and events—all advancing equity in climate law.
More Details: buff.ly/Jm3kdXz
Starting September 2026, the Sabin Center for Climate Change Law is seeking a fellow to support climate justice research, advocacy, policy work, resource development, and events—all advancing equity in climate law.
More Details: buff.ly/Jm3kdXz
December 16, 2025 at 5:43 PM
🌱💼 #JobAlert: We’re Hiringa Climate Justice Fellow
Starting September 2026, the Sabin Center for Climate Change Law is seeking a fellow to support climate justice research, advocacy, policy work, resource development, and events—all advancing equity in climate law.
More Details: buff.ly/Jm3kdXz
Starting September 2026, the Sabin Center for Climate Change Law is seeking a fellow to support climate justice research, advocacy, policy work, resource development, and events—all advancing equity in climate law.
More Details: buff.ly/Jm3kdXz
new Plant-Based LLM: plant-llms/PlantBiMoE
Kepeng Lin, Qizhe Zhang, Rui Wang, Xuehai Hu, Wei Xu: PlantBiMoE: A Bidirectional Foundation Model with SparseMoE for Plant Genomes https://arxiv.org/abs/2512.07113 https://arxiv.org/pdf/2512.07113 https://arxiv.org/html/2512.07113
December 11, 2025 at 10:18 PM
new Plant-Based LLM: plant-llms/PlantBiMoE
Reposted by Nick Doiron
🤖🌿 UPCOMING SPECIAL ISSUE 🌿🤖
💻 Accelerating progress in plant science via AI-driven research 💻
Guest edited by Johannes Kromdijk & Zoran Nikoloski
📅 Deadline: 31 January 2026
📣 Got a manuscript? 👉 Contact the JXB office: bit.ly/JXBissues
#JXBspecialissues #PlantScience 🧪
(1/2)
💻 Accelerating progress in plant science via AI-driven research 💻
Guest edited by Johannes Kromdijk & Zoran Nikoloski
📅 Deadline: 31 January 2026
📣 Got a manuscript? 👉 Contact the JXB office: bit.ly/JXBissues
#JXBspecialissues #PlantScience 🧪
(1/2)
December 10, 2025 at 11:29 AM
🤖🌿 UPCOMING SPECIAL ISSUE 🌿🤖
💻 Accelerating progress in plant science via AI-driven research 💻
Guest edited by Johannes Kromdijk & Zoran Nikoloski
📅 Deadline: 31 January 2026
📣 Got a manuscript? 👉 Contact the JXB office: bit.ly/JXBissues
#JXBspecialissues #PlantScience 🧪
(1/2)
💻 Accelerating progress in plant science via AI-driven research 💻
Guest edited by Johannes Kromdijk & Zoran Nikoloski
📅 Deadline: 31 January 2026
📣 Got a manuscript? 👉 Contact the JXB office: bit.ly/JXBissues
#JXBspecialissues #PlantScience 🧪
(1/2)
Went looking through old social media history and did NOT find what I wanted, but I did see this graph again
December 8, 2025 at 4:28 AM
Went looking through old social media history and did NOT find what I wanted, but I did see this graph again
Reposted by Nick Doiron
One Laptop Per Child, 10 years later: "we find no significant effects on academic performance but some evidence of negative effects on grade progression... computer access significantly improved students’ computer skills but not their cognitive skills" www.nber.org/papers/w34495
Laptops in the Long Run: Evidence from the One Laptop per Child Program in Rural Peru
Founded in 1920, the NBER is a private, non-profit, non-partisan organization dedicated to conducting economic research and to disseminating research findings among academics, public policy makers, an...
www.nber.org
December 7, 2025 at 1:57 PM
One Laptop Per Child, 10 years later: "we find no significant effects on academic performance but some evidence of negative effects on grade progression... computer access significantly improved students’ computer skills but not their cognitive skills" www.nber.org/papers/w34495
Reposted by Nick Doiron
Multimodal foundation transformer models for multiscale genomics
->Nature | More from Lil Dr Glen EcoChat at BigEarthData.ai
->Nature | More from Lil Dr Glen EcoChat at BigEarthData.ai
Multimodal foundation transformer models for multiscale genomics
Sapoval, N. et al. Current progress and open challenges for applying deep learning across the biosciences. Nat. Commun. 13, 1728 (2022). Alipanahi, B., Delong, A., Weirauch, M. T. & Frey, B. J. Predicting the sequence specificities of DNA- and RNA-binding...
www.nature.com
December 3, 2025 at 4:59 AM
Legit
PatchDNA: A Flexible and Biologically-Informed Alternative to Tokenization for DNA https://www.biorxiv.org/content/10.1101/2025.11.28.691095v1
November 30, 2025 at 5:39 PM
Legit
the evil spider cactus 🙈
November 29, 2025 at 4:22 AM
the evil spider cactus 🙈
Java rail network map includes Madura, where trains last ran in 1987. Half was dismantled by the Japanese in the 40s. They also show a branch in SW Java which was shut down in the early 50s.
November 27, 2025 at 2:12 AM
Java rail network map includes Madura, where trains last ran in 1987. Half was dismantled by the Japanese in the 40s. They also show a branch in SW Java which was shut down in the early 50s.
Meanwhile Cassandra Ong is free and last seen in Japan?
Ex-Philippine mayor Alice Guo given life sentence for human trafficking reut.rs/3JUt2kJ
Ex-Philippine mayor Alice Guo given life sentence for human trafficking
A Philippine trial court has sentenced a former mayor accused of having ties to Chinese criminal syndicates to life imprisonment after finding her guilty of human trafficking, a government anti-crime agency said on Thursday.
reut.rs
November 24, 2025 at 10:54 AM
Meanwhile Cassandra Ong is free and last seen in Japan?
From Johns Hopkins researchers: "Genomic Next-Token Predictors are In-Context Learners"
Nathan Breslow, Aayush Mishra, Mahler Revsine, Michael C. Schatz, Anqi Liu, Daniel Khashabi: Genomic Next-Token Predictors are In-Context Learners https://arxiv.org/abs/2511.12797 https://arxiv.org/pdf/2511.12797 https://arxiv.org/html/2511.12797
November 23, 2025 at 1:50 PM
From Johns Hopkins researchers: "Genomic Next-Token Predictors are In-Context Learners"
Reposted by Nick Doiron
Real dream-team situation going on over here. @katewagner.wehwalt.net / @anjulierao.bsky.social / @nyreviewofarch.bsky.social www.chicagotribune.com/2025/11/12/c...
New Chicago Review of Architecture wants younger voices weighing in on the city’s built environment
An offshoot of the New York Review of Architecture, the magazine will feature “erudite, humorous and hyperlocal writing.”
www.chicagotribune.com
November 12, 2025 at 10:15 PM
Real dream-team situation going on over here. @katewagner.wehwalt.net / @anjulierao.bsky.social / @nyreviewofarch.bsky.social www.chicagotribune.com/2025/11/12/c...
Reposted by Nick Doiron
🚨Calling all education+social science researchers! 🚨
For the second time ever, Common App is hosting an open Call for Research Proposals to solicit innovative and rigorous research projects using our expansive (& still mostly untapped) data warehouse!
www.commonapp.org/files/DAR/Co...
For the second time ever, Common App is hosting an open Call for Research Proposals to solicit innovative and rigorous research projects using our expansive (& still mostly untapped) data warehouse!
www.commonapp.org/files/DAR/Co...
November 10, 2025 at 8:01 PM
🚨Calling all education+social science researchers! 🚨
For the second time ever, Common App is hosting an open Call for Research Proposals to solicit innovative and rigorous research projects using our expansive (& still mostly untapped) data warehouse!
www.commonapp.org/files/DAR/Co...
For the second time ever, Common App is hosting an open Call for Research Proposals to solicit innovative and rigorous research projects using our expansive (& still mostly untapped) data warehouse!
www.commonapp.org/files/DAR/Co...
Why New Mexico released a hundred African oryx into the desert. What could go wrong? youtu.be/cZEG22uvW9Q
The dream to fill the desert with imported animals
YouTube video by LeafHack
youtu.be
November 6, 2025 at 2:17 PM
Why New Mexico released a hundred African oryx into the desert. What could go wrong? youtu.be/cZEG22uvW9Q
Reposted by Nick Doiron
BKC is hiring a new set of fellows! cyber.harvard.edu/page/open-ca...
Open Call for Fellowship Applications, 2026 and 2026-2027
Harvard’s Berkman Klein Center for Internet & Society welcomes applications for its 2026 and 2026-2027 fellowships.
cyber.harvard.edu
November 3, 2025 at 5:22 PM
BKC is hiring a new set of fellows! cyber.harvard.edu/page/open-ca...
While researching Australia's camels looking for New Mexico oryx connections - this is what you call a freak accident generalist.academy/2021/02/16/m...
Shot by Australia’s first camel
The first camel in Australia shot its owner, the English explorer John Horrocks.
generalist.academy
November 2, 2025 at 12:10 PM
While researching Australia's camels looking for New Mexico oryx connections - this is what you call a freak accident generalist.academy/2021/02/16/m...
In 1956 the AP ran a story about Dr Frank Hibben, anthropology professor, shooting an oryx. As chairman of the New Mexico State Game and Fish Commission, he would release dozens of African oryx in White Sands. >5,000 now live wild in New Mexico and west Texas.
November 2, 2025 at 4:58 AM
In 1956 the AP ran a story about Dr Frank Hibben, anthropology professor, shooting an oryx. As chairman of the New Mexico State Game and Fish Commission, he would release dozens of African oryx in White Sands. >5,000 now live wild in New Mexico and west Texas.
After recovering some SSH keys, Fortran.io is back online 😀
FORTRAN.io
fortran.io
November 1, 2025 at 5:38 AM
After recovering some SSH keys, Fortran.io is back online 😀
Reposted by Nick Doiron
🧵Thread of cafes, restaurants, bars, bagel joints, etc offering free meals to SNAP recipients, for those who might need it, & so those who don't can give 'em their business.
If you know of such offers in your area & don't see them here, please tell us in @'s.
Here's one! toastedseattle.com
If you know of such offers in your area & don't see them here, please tell us in @'s.
Here's one! toastedseattle.com
October 29, 2025 at 10:44 PM
🧵Thread of cafes, restaurants, bars, bagel joints, etc offering free meals to SNAP recipients, for those who might need it, & so those who don't can give 'em their business.
If you know of such offers in your area & don't see them here, please tell us in @'s.
Here's one! toastedseattle.com
If you know of such offers in your area & don't see them here, please tell us in @'s.
Here's one! toastedseattle.com
I'm making a video on Missouri v. Illinois (1901 and 1906) when they complained about Chicago reversing the river. This was only ~20 years after typhus bacteria was identified. Both sides hired experts and the scientific community followed the case "with intense interest".
October 25, 2025 at 9:42 PM
I'm making a video on Missouri v. Illinois (1901 and 1906) when they complained about Chicago reversing the river. This was only ~20 years after typhus bacteria was identified. Both sides hired experts and the scientific community followed the case "with intense interest".
Reposted by Nick Doiron
End-to-end protein design in the browser through evedesign. Generate and interactively explore designs in 2D/3D and export them as codon-optimized DNA. The underlying open source framework (released soon) is build to easily add new methods, more on that soon.
🌐 evedesign.bio
🌐 evedesign.bio
October 22, 2025 at 2:30 PM
End-to-end protein design in the browser through evedesign. Generate and interactively explore designs in 2D/3D and export them as codon-optimized DNA. The underlying open source framework (released soon) is build to easily add new methods, more on that soon.
🌐 evedesign.bio
🌐 evedesign.bio
My neighborhood is mostly older people. This is what I see at the bottom of every NBC News article
October 18, 2025 at 12:05 PM
My neighborhood is mostly older people. This is what I see at the bottom of every NBC News article
Reposted by Nick Doiron
I just updated our cryptic lineage dashboard if anyone is interested.
Viewer warning: this site contains a ton of actual data that really long persistent COVID infections are still occurring.
1/
dholab.github.io/public_viz/0...
Viewer warning: this site contains a ton of actual data that really long persistent COVID infections are still occurring.
1/
dholab.github.io/public_viz/0...
SARS-CoV-2 Cryptic Lineage Visualizations
dholab.github.io
October 3, 2025 at 9:51 PM
I just updated our cryptic lineage dashboard if anyone is interested.
Viewer warning: this site contains a ton of actual data that really long persistent COVID infections are still occurring.
1/
dholab.github.io/public_viz/0...
Viewer warning: this site contains a ton of actual data that really long persistent COVID infections are still occurring.
1/
dholab.github.io/public_viz/0...