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Reposted by A. Murat Eren (Meren)

Nils Rädecker @radecker.bsky.social · 2d

🪸🧪 We’re hiring! Join our ERC-funded group at the @hifmb.de in Oldenburg, Germany to explore the cellular origins of photosymbiosis:⁣
⁣
𝟏 𝐏𝐨𝐬𝐭𝐝𝐨𝐜 + 𝟐 𝐏𝐡𝐃𝐬 𝐩𝐨𝐬𝐢𝐭𝐢𝐨𝐧𝐬.⁣
Deadlines: Oct 29 & Nov 5. Links below. ⁣

Questions: [email protected]⁣
#Photosymbiosis #HIFMB #ERC #AcademicJobs

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Reposted by A. Murat Eren (Meren)

Microbiome Virtual International Forum @microbiomevif.bsky.social · 2d

💫 #MVIF Season 5 💫

Feel free to join the keynotes by presenting your work–abstract submission is open:
www.microbiome-vif.org/en-US/how-to...

#MVIF is proudly supported by #illumina @corundumsb.bsky.social
and our non-commercial co-organizing partners Seerave Foundation @cunysph.bsky.social

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A. Murat Eren (Meren) @merenbey.bsky.social · 16d

Thanks Igor! They are currently in anvio-dev, but we are working on a v9 release very soon.

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A. Murat Eren (Meren) @merenbey.bsky.social · 18d

Great work, Martial! I love the extensive data and code reporting :)

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Reposted by A. Murat Eren (Meren)

Martial Marbouty @mmarbout.bsky.social · 19d

You like phages ? In this publication, we use metaHiC and our new version of the MetaTOR pipeline to challenge the traditional view of phages with a narrow host range.
@rkoszul.bsky.social @natmicrobiol.nature.com @cnrs.fr @institutpasteur.bsky.social

www.nature.com/articles/s41...

Phages with a broad host range are common across ecosystems - Nature Microbiology

Proximity-ligation-based sequencing from 111 samples and 5 environments reveals that a substantial proportion of phages infect multiple species.

www.nature.com

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A. Murat Eren (Meren) @merenbey.bsky.social · 19d

anvio.org :)

Anvi'o Home

A home for the anvi'o community.

anvio.org

A. Murat Eren (Meren) @merenbey.bsky.social · 20d

Have you ever looked at some differentially occurring gene clusters in a microbial #pangenome and thought to yourself "I wonder if they contribute to any metabolic modules"?

With the most recent changes, the answer is a few clicks away in #anvio 😇

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Reposted by A. Murat Eren (Meren)

Falk Hildebrand @bioinf.bsky.social · 28d

How do you long-read sequence metagenomes? I would argue it starts with the right sample storage & DNA extraction, to enable efficient @nanoporetech.com /@pacbio.bsky.social sequencing, which we investigated in our new paper: www.biorxiv.org/content/10.1...

Massive thanks to Klara for driving this

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Reposted by A. Murat Eren (Meren)

HIFMB @hifmb.de · 29d

Congratulations to HIFMB colleague Kim de Luca, who was selected by MIT Technology Review as one of the 35 Innovators Under 35.
www.technologyreview.com/innovator/ki...

Kim de Luca

She tracks DNA damage to improve cancer treatments and save corals.

www.technologyreview.com

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A. Murat Eren (Meren) @merenbey.bsky.social · Sep 1

Thank you for your time, Oded :)

A. Murat Eren (Meren) @merenbey.bsky.social · Sep 1

A blog post that covers my visit to Barhal, the village where my family comes from:

merenlab.org/2025/09/01/b...

No science this time, just life and personal reflections.

The Weight of a Honey Pot: Memory, Belonging, and the Passage of Time

Meren's pilgrimage to Barhal

merenlab.org

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A. Murat Eren (Meren) @merenbey.bsky.social · Jul 31

PSA: This is what the real male loneliness syndrome looks like.

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A. Murat Eren (Meren) @merenbey.bsky.social · Jul 27

Indeed.

Any of us can come up with multiple ways to fix it in theory. But I also would argue that anyone who thinks deeply about the fundamental aspects of science as a societal endeavor would eventually conclude that there is no fixing it in practice.

I find it all very depressing.

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A. Murat Eren (Meren) @merenbey.bsky.social · Jul 27

Obviously. Scientists were yelling from the top of their lungs about this. That's why the argument "it is difficult to draw the line" as weak as the paper itself. An easier justification would've been simply admitting that journals benefit from publishing things, not from retracting them.

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A. Murat Eren (Meren) @merenbey.bsky.social · Jul 27

Identifying BS is easy when scientists are not distracted by wishful thinking and glamour.

Incentives that are there for flashy stories makes "popularize now, apologize later" a viable strategy for exciting but weak science, since screwing up like this carries no consequences for top journals.

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A. Murat Eren (Meren) @merenbey.bsky.social · Jul 27

I was a PhD student when this paper came out. I printed it out with excitement and brought it to the lab next morning.

My advisor Michael Ferris skimmed through the supplementary material and said "this is cryptic growth with As resistance".

I was shocked and learned something essential that day.

Jeremy Berg @jeremymberg.bsky.social · Jul 27

Why I didn't retract this paper when I was Editor-in-Chief at Science (THREAD 🧵)

Science Magazine @science.org · Jul 24

Science is retracting the December 2010 Research Article, “A bacterium that can grow by using arsenic instead of phosphorus.” (THREAD 🧵) scim.ag/4lGQ9g7

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Reposted by A. Murat Eren (Meren)

Eduardo Rocha @epcrocha.bsky.social · Jul 23

Here's our new broad review on the extended mobility of plasmids, about all mechanisms driving and limiting their transfer. From conjugation to conduction, phage-plasmids to hitchers, molecular to evolutionary dynamics, ecology to biotech. The state of affairs. 1/9 academic.oup.com/nar/article/...

graphical abstract of the article the extended mobility of plasmids

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A. Murat Eren (Meren) @merenbey.bsky.social · Jul 21

A comment I wrote for you is now online at @natcomms.nature.com:

www.nature.com/articles/s41...

Oh, oh, it says "time travel will likely remain forever off the table in our universe" with a citation, so read it maybe? (am I doing the click-bait thing right? 🥲).

Gifting future scientists the past through well-preserved specimens of modern microbial ecosystems - Nature Communications

Historical specimens have enabled transformative insights across kingdoms and ecosystems with new technologies, yet microbes remain largely overlooked in preservation efforts. As we recognize microbia...

www.nature.com

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Reposted by A. Murat Eren (Meren)

Science Magazine @science.org · Jul 17

The mantra “location, location, location” isn’t just about real estate. For life scientists, more than 50% of their productivity can be attributed to the institution where they work, according to a new study. scim.ag/4kKs1YO

Large study of scientists who move their labs reveals how location drives productivity

Concentrating funding at high-powered universities can maximize output, paper argues, but may sacrifice broader benefits

scim.ag

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A. Murat Eren (Meren) @merenbey.bsky.social · Jul 16

WE SHOULD WRITE PAPERS TOGETHER!

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A. Murat Eren (Meren) @merenbey.bsky.social · Jul 16

POV: When you're a middle author of a study, and everything is a matter of life and death 💀

I AM BECOME REVIEWER #2, DESTROYER OF RELATIONSHIPS BEFORE THE STUDY WENT OUT TO REVIEW.

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A. Murat Eren (Meren) @merenbey.bsky.social · Jul 16

New blog post I wrote on 'how we do not choose our families but we can choose people who push us', and ONLY for my scientist colleagues who are looking for things to procrastinate with style (by requiring them to be longer than a post on BlueSky) :p

merenlab.org/2025/07/16/s...

We do not choose our families but we can choose people who push us

A thought in structures that helps us become who we want to become

merenlab.org

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Reposted by A. Murat Eren (Meren)

Tami Lieberman @contaminatedsci.bsky.social · Jun 30

Our paper demonstrating that within-species warfare interactions are ecologically important on human skin is now published in Nature Micro! www.nature.com/articles/s41...

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Reposted by A. Murat Eren (Meren)

MARUM @marumunibremen.bsky.social · Jun 27

Join our team!
MARUM and partner institutes within the #ExcellenceCluster Ocean Floor are offering ➡️ 15 doctoral researcher positions. Please find out more about it here: www.marum.de/en/career/op...

@icbm-uol.bsky.social @hifmb.de @awi.de

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Reposted by A. Murat Eren (Meren)

Daan Speth @daanspeth.bsky.social · Jun 16

A short preprint describing the GlobDB is now on arXiv: arxiv.org/abs/2506.11896

If you find the resource useful, please also check globdb.org for info on how to cite the underlying resources and tools.

Daan Speth @daanspeth.bsky.social · Jun 10

I'm happy to announce the latest release of the GlobDB, available at globdb.org.

The GlobDB is a database of "species dereplicated" microbial genomes, and as of release 226 contains twice the number of species-representative genomes (306,260) than the latest GTDB release.

home | GlobDB

globdb.org

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