Nick Riley
@nmriley.bsky.social
1.2K followers 580 following 120 posts
Assistant Professor, University of Washington, Dept. of Chemistry. PI of the Riley Research Group, @riley-research.bsky.social. Glyco, mass spec, chembio. Sports, food, travel, dogs. riley-research.com
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Reposted by Nick Riley
gautamdey.bsky.social
If you’re applying to your dream lab for an internship/PhD/postdoc, always send a second email 1-2 weeks after the first one if you don’t hear back.

I promise we will be grateful rather than annoyed. My email inbox is a disaster and I’m quite junior - and very few of us have secretarial support
Reposted by Nick Riley
nmriley.bsky.social
Have you wondered how nanoparticle protein coronas (e.g., Seer’s Proteograph XT) can help with glycoprotein enrichment in biofluids?

We were curious, too, and this new @riley-research.bsky.social pre-print led by outstanding postdoc @emmajays.bsky.social details our #glycotime investigations.
emmajays.bsky.social
Can nanoparticles help us probe the glycoproteome?

The new pre-print from @riley-research.bsky.social seeks to answer this question using the Proteograph technology from Seer Inc.

Check out this lovely study on glycoproteins NP-enriched from biofluids here: chemrxiv.org/engage/chemr...
Reposted by Nick Riley
emmajays.bsky.social
Can nanoparticles help us probe the glycoproteome?

The new pre-print from @riley-research.bsky.social seeks to answer this question using the Proteograph technology from Seer Inc.

Check out this lovely study on glycoproteins NP-enriched from biofluids here: chemrxiv.org/engage/chemr...
nmriley.bsky.social
We did not yet! Most of our glyco enrichments happen at the peptide level after trypsin digestion, so we were curious how the NP protein-level enrichment would pair with that. We are currently thinking about protein-level effects toward your point, but nothing to share at this point.
nmriley.bsky.social
NP enrichment also helped O-glycopeptide characterization, but MAX enrichment was less beneficial.

We looked into CSF, too. We think this is one of the first applications of Seer's NPs to CSF, so we did proteomics and glycoproteomics.

Be sure to check out the pre-print if this sounds interesting!
nmriley.bsky.social
It's rare that a single LC-MS/MS can provide IDs for all glycopeptides in a mixture, so we ran enrich enrichment multiple times on the instrument.

This allowed us to capture as much of the population of glycopeptides that we could -- an important thing when exploring how enrichment methods differ!
nmriley.bsky.social
Large dynamic range in biofluids is an issue for glycoproteomics just like with proteomics. We saw that Seer's NP mixtures (A and B) combined with MAX enrichment provided a boost in N-glycopeptide IDs relative to no nanoparticles (NP0), with the majority of IDs being unique to the NP enrichments.
nmriley.bsky.social
Have you wondered how nanoparticle protein coronas (e.g., Seer’s Proteograph XT) can help with glycoprotein enrichment in biofluids?

We were curious, too, and this new @riley-research.bsky.social pre-print led by outstanding postdoc @emmajays.bsky.social details our #glycotime investigations.
emmajays.bsky.social
Can nanoparticles help us probe the glycoproteome?

The new pre-print from @riley-research.bsky.social seeks to answer this question using the Proteograph technology from Seer Inc.

Check out this lovely study on glycoproteins NP-enriched from biofluids here: chemrxiv.org/engage/chemr...
Reposted by Nick Riley
ionopticks.bsky.social
Dr. Tim Veth, a postdoc working with @nmriley.bsky.social at the University of Washington, is tackling glycoproteomics. When we spoke about navigating the complexity of analysing thousands of glycoproteoforms, he shared how reliable chromatography supports his research.

Learn more: bit.ly/4nrMzad
Reposted by Nick Riley
cenmag.bsky.social
@nmriley.bsky.social, a chemical biologist at University of Washington and one of C&EN's Talented 12, will be speaking at the #CENT12 Symposium on Monday, August 18 in Washington, DC. RSVP here: connect.discoveracs.org/talented-12-...

Read more: cen.acs.org/biological-c...
Nick Riley
Reposted by Nick Riley
ionopticks.bsky.social
"I invite all researchers to enter the glycoproteomics field and join the battle.”

With the complexity of glycoproteomics and how little we still know, Tim Veth puts out a rallying cry to speed up development in this promising field.

Learn more about Tim & read our discussion: bit.ly/3IXpo8B
Thousands of forms, one protein: how Tim Veth is deciphering the complex language of Glycans
Tim Veth, a postdoctoral researcher working with Prof. Nicholas M.
bit.ly
nmriley.bsky.social
@riley-research.bsky.social had a great time catching up with local research at the Cascadia Proteomics Symposium last week. The lineup featured talks from Katie Kothlow and Haley Schramm, and a lightning talk/poster from @emmajays.bsky.social

Congrats to Emmajay for her 2nd-place poster award too!
Reposted by Nick Riley
cp-trendsbiochem.bsky.social
Can you believe there's more?! Check out a Spotlight from @timveth.bsky.social and @nmriley.bsky.social highlighting an article on glycoproteomics, and another from Lucia Alvarez and Lucia @chemeslab.bsky.social on intrinsically disordered proteins!
Reposted by Nick Riley
dangaristo.bsky.social
The 500 additional GRFPs NSF awarded were not very evenly distributed across fields, it seems.
www.science.org/content/arti...
Plot showing skewed distribution toward comp science and applied physics
nmriley.bsky.social
The ACS Div. of Analytical Chem. Education Committee launched a "Meet an Analytical Chemist" initiative this spring to highlight members of our community.

Our newest entry showcases @shirajoudan.bsky.social, an Asst. Prof. of Chemistry at @ualberta.bsky.social. Check it out here: shorturl.at/7VFIR
Meet an Analytical Chemist – May 2025
Shira Joudan, Assistant ProfessorDepartment of Chemistry, University of Alberta How did you get started in the field of Analytical Chemistry?  In undergrad, I took introductory analytical chemistry…
shorturl.at
Reposted by Nick Riley
iainwilsonwien.bsky.social
Nick Riley @nmriley.bsky.social at #ASMS2025
Varying ETD and EThcD parameters (q and Tau values) for increase O-glycopeptide identifications.
Reposted by Nick Riley
nmriley.bsky.social
#ASMS2025 offers great evening workshops. If you are interested in real-time decision-making during MS data acquisition or still looking for one to join,

consider the Real time Mass Spectrometry Workshop featuring speakers and panelists Sarah Sipe, Aarthie Senathirajah, and Manuel Peris Diaz.
Reposted by Nick Riley
dschweppe.bsky.social
#ASMS2025
Come here about the latest in real-time instrument control including applications to single cell proteomics (@parallelsq.bsky.social), #glycotime, and quantitative proteomics!
nmriley.bsky.social
#ASMS2025 offers great evening workshops. If you are interested in real-time decision-making during MS data acquisition or still looking for one to join,

consider the Real time Mass Spectrometry Workshop featuring speakers and panelists Sarah Sipe, Aarthie Senathirajah, and Manuel Peris Diaz.
nmriley.bsky.social
Organized by @dschweppe.bsky.social, Will Barshop, and me. See you there!
nmriley.bsky.social
#ASMS2025 offers great evening workshops. If you are interested in real-time decision-making during MS data acquisition or still looking for one to join,

consider the Real time Mass Spectrometry Workshop featuring speakers and panelists Sarah Sipe, Aarthie Senathirajah, and Manuel Peris Diaz.
nmriley.bsky.social
We look forward to talking with you and hearing about all the great science from our colleagues. Always exciting to be here and connect with folks!