Sophie Abby
@soabby.bsky.social
720 followers
230 following
22 posts
Researcher at CNRS, TIMC lab, Grenoble France
compBio@TrEE group https://tree-timc.github.io/compbio
Archaea & Bacteria Evolution
Comparative genomics and Phylogenomics
Evolution of Cellular machineries & Metabolic pathways
https://sophieabby.github.io
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![Exploring the space of self-reproducing RNA using generative models, Martin Weigt
Exploring the archaic introgression landscape of admixed populations through
joint ancestry inference, Jazeps Medina Tretmanis [et al.]
Predicting natural variation in the yeast phenotypic landscape with machine
learning, Sakshi Khaiwal [et al.]
Phylodynamic modeling with unsupervised Bayesian neural networks, Marino
Gabriele [et al.]
Likelihood-free inference of phylogenetic tree posterior distributions, Luc Blas-
sel [et al.]
Generative continuous time model reveals epistatic signatures in protein evolu-
tion, Barrat-Charlaix Pierre
Neural posterior estimation for high-dimensional genomic data from complex pop-
ulation genetic models, Jiseon Min [et al.]
A differentiable model for detecting diversifying selection directly from alignments
in large-scale bacterial datasets, Leonie Lorenz [et al.]
Detecting interspecific positive selection using transformers, Charlotte West [et al.]
Predicting Multiple Sequence Alignment Uncertainty via Machine Learning, Lucia
Martin-Fernandez [et al.]
Graph Neural Networks for Likelihood-Free Inference in Diversification Mod-
els, Amélie Leroy [et al.]
Popformer: learning general signatures of genetic variation and natural selection
with a self-supervised transformer, Leon Zong [et al.]](https://cdn.bsky.app/img/feed_thumbnail/plain/did:plc:7x5c6ifrcznmg4mzhfuc2a6r/bafkreidur7bz43o2jhwr4gbt36awozawqthbkkfeszxjkxf4kvhyh7q6du@jpeg)
![PRIVET: PRIVacy metric based on Extreme value Theory, Antoine Szatkownik [et
al.]
Generative models for inferring the evolutionary history of the malaria vector
Anopheles gambiae, Amelia Eneli [et al.]
Language Models Outperform Supervised-Only Approaches for Conserved Ele-
ment Comprehension, Eyes Robson [et al.]
Identification and Classification of Orphan Genes, Spurious Orphan Genes, and
Conserved Genes from the human microbiome, Chen Chen
Neural Simulation-based inference of demography and selection, Francisco De
Borja Campuzano Jiménez [et al.]
Species Identification and aDNA Read Mapping Using k-mer Embeddings, Filip
Thor [et al.]
Contrastive Learning for Population Structure and Trait Prediction, Filip Thor [et
al.]
Protein and genomic language models chart a vast landscape of antiphage de-
fenses, Mordret Ernest
The Phylogenomics and Sparse Learning of Trait Innovations, Gaurav Diwan [et
al.]](https://cdn.bsky.app/img/feed_thumbnail/plain/did:plc:7x5c6ifrcznmg4mzhfuc2a6r/bafkreig4akadduemzbit67bv7jnr7x2ircwiriykabg2imuf3phy6hhube@jpeg)
Reposted by Sophie Abby
Reposted by Sophie Abby
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Reposted by Sophie Abby
Reposted by Sophie Abby
Reposted by Sophie Abby
Reposted by Sophie Abby
Reposted by Sophie Abby
Reposted by Sophie Abby
Reposted by Sophie Abby
Reposted by Sophie Abby
Nancy Moran
@nancy-moran.bsky.social
· May 29
Reposted by Sophie Abby
Sean Eddy
@cryptogenomicon.bsky.social
· May 22
Reposted by Sophie Abby
