Will Matlock
@wtmatlock.bsky.social
540 followers 410 following 36 posts
Wellcome Early-Career Fellow @milnerevolution.bsky.social working on mobile genetic element genomics (he/him) 🏳️‍⚧️🇵🇸 Formerly @biology.ox.ac.uk and @modmedmicro.bsky.social
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Reposted by Will Matlock
samlipworth.bsky.social
We have a fully funded PhD studentship available @modmedmicro.bsky.social in Oxford to work on a really cool project looking at population heterogeneity in bloodstream infections www.ndm.ox.ac.uk/study/dphil-... Please spread the word/get in touch if you'd like to chat.
DPhil project themes
www.ndm.ox.ac.uk
wtmatlock.bsky.social
Please feel free to message me with any questions! ☺️
craigmaclean.bsky.social
New ERC funded computational postdoc position in my lab! We are looking for someone who will study the genomics of bacterial evolution using samples from experimental evolution and clinical trials. Lots of opportunities for interesting and fun collaboration!
my.corehr.com/pls/uoxrecru...
Job Details
my.corehr.com
Reposted by Will Matlock
rachelmwheatley.bsky.social
🔊 Fully-funded 4yr PhD studentship with the NWB DTP, working on novel regulators of bacterial nitrogen metabolism 🦠
Primary supervisor: @ariannebabina.bsky.social (University of Glasgow)
Co-supervisors: myself (Queen’s Belfast)+ Dónal Wall (Glasgow)
🌟 please share 🌟

www.gla.ac.uk/postgraduate...
University of Glasgow - Postgraduate study - Centres for Doctoral Training - NorthWest Biosciences - Our Projects - Underpinning Bioscience - Arianne Babina
www.gla.ac.uk
Reposted by Will Matlock
samlipworth.bsky.social
Come and work with Nicole Stoesser and I in Oxford with the fantastic team @modmedmicro.bsky.social - great opportunity for a postdoc in microbial genomics to do some creative research with great datasets as part of our HPRU.

my.corehr.com/pls/uoxrecru...
Job Details
my.corehr.com
Reposted by Will Matlock
zaminiqbal.bsky.social
Delighted to see our paper studying the evolution of plasmids over the last 100 years, now out! Years of work by Adrian Cazares, also Nick Thomson @sangerinstitute.bsky.social - this version much improved over the preprint. Final version should be open access, apols.
Thread 1/n
Reposted by Will Matlock
craigmaclean.bsky.social
New pre-print from my lab!
Plasmids link antibiotic resistance and phage defense.

E.coli plasmids are hotspots for both antibiotic resistance and phage defense. Phage therapy has the potential to accidentally select for antibiotic resistance!!!
#microsky#AMR#phage

www.biorxiv.org/content/10.1....
Plasmids link antibiotic resistance genes and phage defense systems in E. coli
Phage therapy has been proposed as an alternative to antibiotics to treat resistant infections. However, we have a limited understanding of how antibiotic resistance genes (ARGs) associate with bacter...
www.biorxiv.org
Reposted by Will Matlock
biorxiv-evobio.bsky.social
Plasmids link antibiotic resistance genes and phage defense systems in E. coli https://www.biorxiv.org/content/10.1101/2025.07.25.666796v1
Reposted by Will Matlock
zaminiqbal.bsky.social
Delighted to see this paper from danderson123.bsky.social 's PhD out. We have been building tools for AMR gene detection for over a decade now, but multicopy genes remain challenging. Dan shows that with a gene-space de Bruijn graph and long reads, you can do well
www.biorxiv.org/content/10.1...
Reposted by Will Matlock
biorxiv-microbiol.bsky.social
The leading region of many conjugative plasmids is depleted in restriction-modification targets https://www.biorxiv.org/content/10.1101/2025.04.03.647016v1
wtmatlock.bsky.social
Congrats! A brilliant demonstration of how slick PanGraph is 👏
Reposted by Will Matlock
rachelmwheatley.bsky.social
Deadline in ‼️3 weeks‼️ for this project with me & @paulhoskisson.bsky.social 🦠 🧫
rachelmwheatley.bsky.social
Funded PhD project now open via NorthWest Bio DTP - Space invaders: genetic and metabolic factors underpinning successful pathogen invasion into microbial communities 🦠

Project description: shorturl.at/RmMeR
How to apply: shorturl.at/JOtaH
🌟 Applications now open with a deadline of January 6th 🌟
wtmatlock.bsky.social
Yes!! 🎉 We should catch up soon…
Reposted by Will Matlock
zaminiqbal.bsky.social
Latest data from AllTheBacteria described in our updated preprint. All illumina WGS bacterial+archaeal sequence data to Aug 2024 consistently assembled, QC, and now AMR profiling. That's 2.4 million genomes. Gene annotations almost done , coming next. Please use!

www.biorxiv.org/content/10.1...
AllTheBacteria - all bacterial genomes assembled, available and searchable
The bacterial sequence data publicly available at the global DNA archives is a vast source of information on the evolution of bacteria and their mobile elements. However, most of it is either unassemb...
www.biorxiv.org
Reposted by Will Matlock
Reposted by Will Matlock
brockhurstlab.bsky.social
Use it or lose it: Unless we publish papers in our society owned and published journals they will cease to be, along with all the conferences and meetings the proceeds support. Microbiology Society publishes many excellent journals, all edited by experts. #microsky www.microbiologyresearch.org
Microbiology Society
Microbiology Society journals contain high-quality research papers and topical review articles. We are a not-for-profit publisher and we support and invest in the microbiology community, to the benefi...
www.microbiologyresearch.org
wtmatlock.bsky.social
Now updated to include the NCBI accessions for the short- and long-reads and hybrid assemblies… please use them!
Reposted by Will Matlock
zaminiqbal.bsky.social
Now out in MGen! Daria Frolova's paper on measuring plasmid relatedness using rearrangement distances

www.microbiologyresearch.org/content/jour...

#microsky
zaminiqbal.bsky.social
First paper from my student Daria Frolova's PhD now on biorxiv:
www.biorxiv.org/content/10.1...
The key question: plasmids change structurally ~as fast as they mutate, so how can we decide whether 2 plasmids are "the same plasmid" for epi purposes?
1/n
www.biorxiv.org