Yu Sugihara
@yusugihara.bsky.social
270 followers 420 following 16 posts
Researcher at The Sainsbury Laboratory, Evolution | Population genetics | Plant-microbe interactions https://yusugihara.github.io/
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yusugihara.bsky.social
🎉 Exciting news during #2025ISMPMI
Our AlphaFold sensor vs helper NLR paper is now published in @newphyt.bsky.social‬!

Big thanks to the reviewers for their constructive feedback 🙏

📖 Check out the peer-reviewed version here 👇
🔗 nph.onlinelibrary.wiley.com/doi/10.1111/...

bsky.app/profile/yusu...
Reposted by Yu Sugihara
rstam.bsky.social
Now with official press release. I'm very much looking forward to welcome @cbarragan.bsky.social in January

www.uni-kiel.de/en/details/n...
Reposted by Yu Sugihara
biorxiv-bioinfo.bsky.social
Accurate and efficient phylogenetic inference through end-to-end deep learning https://www.biorxiv.org/content/10.1101/2025.09.30.679045v1
Reposted by Yu Sugihara
Reposted by Yu Sugihara
jxbotany.bsky.social
🚨 Applications are open for the 2026 JXB Editorial Internships! 🚨

🌱 Designed for ECRs, you will gain behind-the-scenes publishing experience, write commentary pieces & join the JXB Editorial Board meeting next year 👩‍💻✈️

Deadline: 30 Sept 2025

👉 bit.ly/jxbinterns

#PlantScience 🧪
JXB EDITORIAL
INTERNSHIPS 2026
Who is this for?
• Early career researchers (2-8 yrs postgrad/postdoc experience)
What will you do?
• Assess submitted manuscripts (with editorial mentorship)
• Write commentary articles for publication in JXB
• (Optional) Join JXB's social media activities
Benefits for you:
• Gain editorial & publishing experience
• Career development as a researcher
• Free SEB membership (1 year)
• Invitation to JXB's Editorial Board meeting in 2026
Apply by 30th September 2025
bit.ly/jxbinterns
Reposted by Yu Sugihara
geminiteamlab.bsky.social
📢 A Junior Professorship (W1, tenure track) is open at the Center for Plant Molecular Biology at Uni Tübingen (@zmbp-tuebingen.bsky.social) — to work on plant protein biochemistry (composition, structure, dynamics, or regulation of protein complexes). 🌱 Great opportunity — Apply by Oct 17th!
Reposted by Yu Sugihara
clemmar.bsky.social
Super excited and honoured to have been awarded an ERC Starting Grant for CooPAIRation!

How do plant immune receptors work together to trigger an immune response? Can we modulate immune responses for disease resistance? We will tackle these questions in CooPAIRation

Positions to be announced soon!
erc.europa.eu
📣 The ERC Starting Grant call results are out!

Find out which early-career researchers will receive funding this year, what they will be investigating, where they will be based... plus lots of other #ERCStG facts & figures for 2025!

➡️ buff.ly/IsafuFh

#FrontierResearch 🇪🇺#EUfunded #HorizonEurope
Reposted by Yu Sugihara
zoebernasconi.bsky.social
Check out our new pre-print! ✨
We cloned AvrWTK4, the first wheat powdery mildew effector recognised by a tandem kinase protein, and show that an HMA-like integrated domain in WTK4 acts as pathogen decoy. Discover the whole story on bioRxiv ⬇️
biorxivpreprint.bsky.social
An HMA-like integrated domain in the wheat tandem kinase WTK4 recognises an RNase-like pathogen effector https://www.biorxiv.org/content/10.1101/2025.08.26.672365v1
Reposted by Yu Sugihara
jsantoyo.bsky.social
Dotplotic: a lightweight visualization tool for BLAST + alignments and genomic annotations. #BLAST #Visualization #Genomics #Bioinformatics #BMCbioinformatics
bmcbioinformatics.biomedcentral.com/articles/10....
Reposted by Yu Sugihara
siluwang.bsky.social
Why do speciation rates vary across the tree of life?
Some of the best yet most underappreciated places for this investigation are natural hybrid zones.
This preprint takes you to the hybrid zones in the origin of species to find a clue. 👉 shorturl.at/N7FXE
#Speciation #Evolution #hybridization
Reposted by Yu Sugihara
kranzuschlab.bsky.social
Two major breakthroughs for the nucleotide immune signaling field in pre-print by @romihadary.bsky.social @soreklab.bsky.social www.biorxiv.org/content/10.1...

(1) Beautiful bioinformatic analyses reveal known viral nucleotide sponges are members of enormous protein families ubiquitous in phages
Reposted by Yu Sugihara
nickdesnoyer.bsky.social
Friday Flower 001: Mimulus lewisii 🌸✨

Monkeyflowers are masterpieces of design with nectar-guide spots formed by an activator–inhibitor system of MYB transcription factors. These generate reaction–diffusion patterns across the ventral petal.
Reposted by Yu Sugihara
fervillanea.bsky.social
Our paper on the evolution of MUC19 in humans, Neanderthals, and Denisovans is finally out today in Science!

This has been a six-year effort by 13 authors to weave together 3 separate but related evolutionary stories around this one gene (more on thread 🧵).

www.science.org/doi/10.1126/...
The MUC19 gene: An evolutionary history of recurrent introgression and natural selection
We study the gene MUC19, for which some modern humans carry a Denisovan-like haplotype. MUC19 is a mucin, a glycoprotein that forms gels with various biological functions. We find diagnostic variants ...
www.science.org
Reposted by Yu Sugihara
Reposted by Yu Sugihara
tatsuyanobori.bsky.social
How can we better understand the plant immune system? In my new @cp-cellhostmicrobe.bsky.social piece, I propose “immune cell states” as a framework for uniting molecular and cellular perspectives.

www.cell.com/cell-host-mi...