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Andrew Millard

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H-index: 39
Biology 42%
Environmental science 37%
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Reposted by: Andrew Millard, Alan W. Walker

bugsinyourguts.bsky.social
If you are UK-based and working on any aspect of microbiomes (human, plant, insect, soil, animal, ...), please do sign up to Microbiome-Net for details of networking, funding and training opportunities.

forms.office.com/pages/respon...
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by Andrew Millard

milja001.bsky.social
Got an email to say your manuscript had failed manuscripts checks as the corresponding author email was missing and is required ...
I am the corresponding author 🤔..
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by Andrew Millard

milja001.bsky.social
Sorry we don't have any
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by Andrew Millard

milja001.bsky.social
Damnit . Thanks , attempt 2
millardlab.org/bacteriophag...
Phage Genomes Aug 2025 – Millardlab
millardlab.org
1

by Andrew Millard

milja001.bsky.social
After a busy period , @ryancook94.bsky.social and I have have updated links to latest INPHARED dataset. With 37.5K genomes now. If some "iffy" genomes have got thought the automated and then out manual filters. Let us know the accession numbers so we can exclude

millardlab.org/bacteriophage-…
https://millardlab.org/bacteriophage-…
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Reposted by: Andrew Millard

biolucy.bsky.social
Submitted my first set of annual review stuff for my PhD (yes I started end of September but the annual review is due 1st June) and looking back on the past 8 months... Wow I have grown into even more of a badass girlie 😎🧪 #phd #microsky
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Reposted by: Andrew Millard

addyblanch.bsky.social
New preprint up on the changes in the bovine virome though different life stages led by @milja001.bsky.social @ryancook94.bsky.social www.biorxiv.org/content/10.1...
Life-Stage Transitions Drive Distinct Gut Viral Communities in Dairy Cattle
Ruminant gut microbial communities profoundly influence host health and environmental impacts, yet their viral components remain poorly characterised across developmental transitions. Here, we analyse...
www.biorxiv.org
2 4

by Andrew Millard

milja001.bsky.social
We agreed to meet in the middle.....you were just more efficient at getting to the middle ....😁
2

Reposted by: Andrew Millard

ryancook94.bsky.social
This is probably my last piece of work from my @medresfdn.bsky.social funded PhD at @uniofnottingham.bsky.social (thanks for all the support over the years!). Contributions from @milja001.bsky.social @evelienadri.bsky.social (and many others not yet on Bluesky) 13/13
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Reposted by: Andrew Millard

ryancook94.bsky.social
The dairy cow gut virome is a dynamic ecosystem that could be an under-studied player in sustainable agriculture 🔑

Preprint: www.biorxiv.org/content/10.1...
#Microbiome #Virome #ClimateScience #Agriculture #Dairy #Cows #Methanogens 12/13
Life-Stage Transitions Drive Distinct Gut Viral Communities in Dairy Cattle
Ruminant gut microbial communities profoundly influence host health and environmental impacts, yet their viral components remain poorly characterised across developmental transitions. Here, we analyse...
www.biorxiv.org
1 4 4

Reposted by: Andrew Millard

ryancook94.bsky.social
1,338 vOTUs were predicted complete. @milja001.bsky.social and I agreed to manually inspect the annotations of every single one. I started at the top, he started at the bottom (I think he only did 50 though despite agreeing to do half 💁‍♂️). All of them looked viral in origin, and most were novel 4/13
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Reposted by: Andrew Millard

ryancook94.bsky.social
We profiled the faecal virome of dairy cows across key life stages with ultra-deep Nanopore and Illumina sequencing 🐮

We recovered over 30,000 vOTUs (approximate to species), and included shallow bulk metagenomes for each sample to place the viruses within the context of their microbial hosts 3/13
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Reposted by: Andrew Millard

ryancook94.bsky.social
Why does this matter? Dairy cows = 265 million worldwide, huge importance in food production and greenhouse gas emissions. Yet we know very little about their gut viral communities across key life stages 🐄 2/13
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Reposted by: Andrew Millard

ryancook94.bsky.social
🧬🐄 NEW PREPRINT: Really happy to finally share the last big piece of work from my PhD!

Spoiler: Cows are great and so are their viromes 🧵1/13

www.biorxiv.org/content/10.1...
Life-Stage Transitions Drive Distinct Gut Viral Communities in Dairy Cattle
Ruminant gut microbial communities profoundly influence host health and environmental impacts, yet their viral components remain poorly characterised across developmental transitions. Here, we analyse...
www.biorxiv.org
2 15 39

by Andrew Millard

milja001.bsky.social
Interested in phages ?
Want to work as team that will isolate, genome sequence and charachterise 1000s of phage to build a biobank .
Come work with me and Martha Clokie at Leicester

jobs.le.ac.uk/vacancies/va...
Vacancy Search Results - University of Leicester Recruitment Team
View our Latest Vacancies
jobs.le.ac.uk
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by Andrew Millard

milja001.bsky.social
Take away coffees are served differently in Vietnam..bit fancier than standard Costa slop
,😁
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by Andrew Millard

milja001.bsky.social
Contact Thomas at [email protected]

www.biocompass.dk
BioCompass.dk
www.biocompass.dk
1 1

by Andrew Millard

milja001.bsky.social
I'll ask Thomas . He isn't this platform . And yes it would be
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by Andrew Millard

milja001.bsky.social
Oops
Some what late in replying .

Link for May
millardlab.org/phage-genome...
Phage Genomes May 2025 – Millardlab
millardlab.org

by Andrew Millard

milja001.bsky.social
www.biorxiv.org/content/10.1...

Searching for lytic phages in bacterial genome assemblies ..!
Hidden in plain sight: Bacterial genomes reveal thousands of lytic phages with therapeutic potential
Phages are typically classified as temperate, integrating into host genomes, or lytic, replicating and killing bacteria. Lytic phages are not expected in bacterial genome sequences, yet our analysis o...
www.biorxiv.org
2 20 37

by Andrew Millard

milja001.bsky.social
We @ryancook94.bsky.social , updated number of phage genomes we can find in NCBI .... Took longer than it should to do this months ...

millardlab.org/home/bacteriop…
https://millardlab.org/home/bacteriop…
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Reposted by: Andrew Millard

antoniasagona.bsky.social
Many congratulations to Mickey @mickey-tad.bsky.social for successfully defending his viva today!! My warmest thanks to Andy @milja001.bsky.social and Lona Alkhalaf for being his examiners and to @nezislab.bsky.social for serving as Exam Advisor! @warwicklifesci.bsky.social @albertilab.bsky.social
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Reposted by: Andrew Millard

cyanoney.bsky.social
Job claxon!

Senior postdoc research associate position at the Becky Mayer Centre for Phage Research at the University of Leicester, working with @milja001.bsky.social and Martha Clokie.

Brilliant opportunity!

jobs.le.ac.uk/vacancies/11...
Senior Post Doctoral Research Associate– Protein Lead in Leicester | University of Leicester Recruitment Team
View details and apply for this Senior Post Doctoral Research Associate– Protein Lead vacancy in Leicester. You will lead an independent research project within the Becky Mayer Centre for Pha...
jobs.le.ac.uk
12 9

by Andrew Millard

milja001.bsky.social
taxMyPhage made Jans pick...in this month's Capsid and tail ..
phage.directory

ptax.ku.dk

github.com/amillard/tax_m…
Phage Directory
Phage Directory curates a database of phage labs, phages, and host strains to advance research and phage therapy.
phage.directory
1 4

by Andrew Millard

milja001.bsky.social
Now updated with the latest ICTV taxonomy

by Andrew Millard

milja001.bsky.social
we ( @ryancook94.bsky.social ) updated genomes in INPHARED
millardlab.org/phage-genomes-…
There are more genomes than last month! Shocker. Haven't had a chance to analyse yet
https://millardlab.org/phage-genomes-…
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by Andrew Millard

milja001.bsky.social
Great to have you involved @remidenise.bsky.social .might even meet in person at some point :-)
remidenise.bsky.social
remidenise.bsky.social @remidenise.bsky.social · Feb 25
🚀 Excited to share our new paper: taxMyPhage: Automated Taxonomy of dsDNA Phage Genomes at the Genus and Species Level 🦠🔬!

Big thanks to all collaborators, especially @milja001.bsky.social & Thomas Sicheritz-Pontén! 🙌

📄 www.liebertpub.com/doi/10.1089/...
taxMyPhage: Automated Taxonomy of dsDNA Phage Genomes at the Genus and Species Level | PHAGE
Background: Bacteriophages are classified into genera and species based on genomic similarity, a process regulated by the International Committee on the Taxonomy of Viruses. With the rapid increase in...
www.liebertpub.com
3

Reposted by: Andrew Millard

remidenise.bsky.social
🚀 Excited to share our new paper: taxMyPhage: Automated Taxonomy of dsDNA Phage Genomes at the Genus and Species Level 🦠🔬!

Big thanks to all collaborators, especially @milja001.bsky.social & Thomas Sicheritz-Pontén! 🙌

📄 www.liebertpub.com/doi/10.1089/...
taxMyPhage: Automated Taxonomy of dsDNA Phage Genomes at the Genus and Species Level | PHAGE
Background: Bacteriophages are classified into genera and species based on genomic similarity, a process regulated by the International Committee on the Taxonomy of Viruses. With the rapid increase in...
www.liebertpub.com
1 9 27

Reposted by: Andrew Millard

elliejameson.bsky.social
Phage taxonomy doesn’t have to be taxing, my latest cartoon for the Phage journal. To illustrate 𝘁𝗮𝘅𝗠𝘆𝗣𝗵𝗮𝗴𝗲 lnkd.in/dAXK4sSt @milja001.bsky.social
Black and white ink cartoon of a myovirus-like phage with eyes and eyebrows looking confused with “?!?” above its head. The page is hovering above a hexagonal child’s sorting toy with different shaped holes. On the front of the toy is a simple phylogenetic tree with shapes corresponding to the holes at the end of the branches
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by Andrew Millard

milja001.bsky.social
PHAGE Journal with some phenotype data, to make it a Phage Introduction www.liebertpub.com/doi/10.1089/...
www.liebertpub.com
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References

Fields & subjects

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