Scholar

Koen Van Den Berge

H-index: 17
Environmental science 36%
Biology 19%
thomvolker.bsky.social
After two weeks, I'm finally done!

In this post, I explain different approaches for solving linear regression in R: directly, using QR, singular value and Cholesky decompositions, and do some benchmarking for comparison with in-built approaches.

thomvolker.github.io/blog/2506_re...
restingdinoface.bsky.social
Dire wolves were not close relatives of gray wolves. They last shared a common ancestor more than 5 million years ago. What Colossal has done is make something new and slapped a dire wolf sticker on it, as if an organism equals a hypothetical genome.
Dire Wolves Were Not Really Wolves, New Genetic Clues Reveal
The extinct giant canids were a remarkable example of convergent evolution
www.scientificamerican.com
amydwillis.bsky.social
We've just released radEmu v2.0.0 🥳🦤😻

`remotes::install_github("statdivlab/radEmu")`

A huge thanks to users for sharing their requests and questions, and to the maintenance team (Sarah and @davidandacat.bsky.social ) for their time and commitment!

Release notes: github.com/statdivlab/r...
A screenshot of the release notes for radEmu v2. Text available at https://github.com/statdivlab/radEmu/releases

Reposted by: Koen Van Den Berge

science.org
In Science, researchers detail a nanoscale-resolution reconstruction of a millimeter-scale fragment of human cerebral cortex, giving an unprecedented view into the structural organization of brain tissue at the supracellular, cellular, and subcellular levels. scim.ag/3FvpAKy #BrainAwarenessWeek
A single neuron (white) shown with 5,600 of the axons (blue) that connect to it. The synapses that make these connections are shown in green. The cell body (central core) of the neuron is about 14 micrometers across.

Reposted by: Koen Van Den Berge

davi1893.bsky.social
This is long overdue, but over the winter break we were finally able to write up our sgdGMF paper:
arxiv.org/abs/2412.20509

We present a stochastic gradient descent method that allows to efficiently and very quickly estimate latent factors for, e.g., dimensionality reduction of single-cell data

Reposted by: Koen Van Den Berge

anshulkundaje.bsky.social
Very excited to announce that the single cell/nuc. RNA/ATAC/multi-ome resource from ENCODE4 is now officially public. This includes raw data, processed data, annotations and pseudobulk products. Covers many human & mouse tissues. 1/

www.encodeproject.org/single-cell/...
Single cell – ENCODEHomo sapiens clickable body map
www.encodeproject.org

Reposted by: Koen Van Den Berge

Reposted by: Koen Van Den Berge

Reposted by: Koen Van Den Berge

Reposted by: Koen Van Den Berge

Reposted by: Koen Van Den Berge

Reposted by: Koen Van Den Berge

Reposted by: Koen Van Den Berge

Reposted by: Koen Van Den Berge

Reposted by: Koen Van Den Berge

Reposted by: Koen Van Den Berge

Reposted by: Koen Van Den Berge

Reposted by: Koen Van Den Berge

Reposted by: Koen Van Den Berge

Reposted by: Koen Van Den Berge

Reposted by: Koen Van Den Berge

Reposted by: Koen Van Den Berge

Reposted by: Koen Van Den Berge

Reposted by: Koen Van Den Berge

by Stijn BaertReposted by: Koen Van Den Berge

References

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