Dan Udwary
danudwary.secondarymetabolism.com
Dan Udwary
@danudwary.secondarymetabolism.com
Natural products biosynthesis and computational biologist at JGI. Host of http://naturalprodcast.com This is my personal account, not my employer's, and things I say or re-post are not representative of them, and maybe not even me.
Reposted by Dan Udwary
We are hiring! If you're interested in exploring the #biogeography of #prokaryotes using #genomics and #metagenomics, are interested in biology and geographic information systems, and are passionate about #OpenScience, this is for you! New PhD and PostDoc positions in my lab at Aalborg University
November 24, 2025 at 8:49 PM
Reposted by Dan Udwary
Oh my gosh. This is... A thing. Please allow a microbiologist who has played with the microbe that makes this to waffle on for a bit in a short thread. (1)
British and Australian chemists have discovered a powerful new antibiotic called pre-methylenomycin C lactone, hiding in a well-known soil bacterium. This molecule kills drug-resistant bacteria without triggering resistance. buff.ly/YlXaONo
#ShareGoodNewsToo
Scientists find hidden antibiotic 100x stronger against deadly superbugs
A team of scientists discovered a hidden antibiotic 100 times stronger than existing drugs against deadly superbugs like MRSA. The molecule had been overlooked for decades in a familiar bacterium. It…
buff.ly
November 16, 2025 at 8:02 PM
Reposted by Dan Udwary
November 22, 2025 at 4:37 PM
Reposted by Dan Udwary
Give a white man a gadget and a mission and that's the happiest he'll ever be.
November 20, 2025 at 3:01 PM
Reposted by Dan Udwary
OK, #bioinformatics folk. We have some (many many) reads from a metagenome. They have been binned into a bacterial genome. They have no matches to any known genome in any database. They code for "bacterial" genes. What are good triple-checks to do to argue that they are not, in fact, euk sequence?
November 18, 2025 at 5:29 PM
Reposted by Dan Udwary
There is no ethical ketchup under capitalism.
November 15, 2025 at 4:42 AM
Reposted by Dan Udwary
First publication during my PhD is now accepted! Thanks SMBE24 'Hidden Dimensions' team for making it happen.
Brasó-Vives et al. publish a new Perspective in GBE, highlighting underexplored dimensions of genomic variation that contribute to phenotypic diversity beyond the DNA sequence, contributing to our understanding of genome evolution.

🔗 doi.org/10.1093/gbe/evaf204

#genome #evolution
November 14, 2025 at 2:52 PM
Reposted by Dan Udwary
Happy Partially Muscled Skeleton Stands by the Perimeter Fence and Screams for 30 Seconds Before Vanishing Day to all who observe.
November 14, 2025 at 3:42 PM
Who do I know going to PacifiChem?
#secmet
November 13, 2025 at 4:25 PM
Reposted by Dan Udwary
The 2026 Chemistry Faculty Jobs List has 303 tenure-track positions and 39 teaching-only positions: docs.google.com/spreadsheets... #facultychemjobs #chemsky #chemchat ⚗️🧪
The 2026 Chemistry Faculty Jobs List
docs.google.com
November 12, 2025 at 6:23 PM
Reposted by Dan Udwary
No no no begs every archivist. You are never going to be able to find anything. Please don’t start using emojis in file names. Who asked for this? What fresh hell is next?
November 12, 2025 at 10:38 AM
Reposted by Dan Udwary
Podcasting’s Diversity Problem: 64% of Hosts Are Male, 77% Are White, USC Study Finds www.thewrap.com/usc-study-po...
Podcasting's Diversity Problem: 64% of Hosts Are Male, 77% Are White, USC Study Finds
The hosts of the top 100 podcasts of 2024 were overwhelmingly white and male, a new comprehensive study from USC reveals.
www.thewrap.com
November 11, 2025 at 4:53 PM
Reposted by Dan Udwary
Hey, a lot of people are talking about changing affiliation from Democratic to Independent.

Let me tell you why you shouldn’t do that in Colorado.

One of the main ways to get a primary challenge candidate on a ballot is to caucus for your party. You need to be registered as a Dem to caucus.
November 10, 2025 at 3:32 PM
On the bright side, now we get to watch how the Dems will fuck up releasing the Epstein files.
November 10, 2025 at 2:57 AM
Oh my god fuck off
November 8, 2025 at 10:20 PM
Reposted by Dan Udwary
If a superhuman intelligence came into being and we said, “how do we end scarcity?” I promise you the people who had one hand on the plug to that superhuman intelligence would pull that plug if the AI gave the actual answer, because they don’t want to end scarcity.
November 7, 2025 at 3:04 PM
Reposted by Dan Udwary
KOKO: Chatgpt, good chatgpt, vibe code app
ME: No Koko the app doesn't work, it won't function
KOKO: Gorilla code, gorilla engineer
ME: Koko the app doesn't even load on mobile
KOKO: jealousy cynic
November 7, 2025 at 3:23 PM
Reposted by Dan Udwary
I have been loudly, persistently anti-Trump since the beginning. And tonight's election results just make me more sure: *there are more of us than there are of them* A good hard look at Trumpism in action has made that impossible to ignore.

Let's take this country back, and let's make it better.
November 5, 2025 at 2:37 AM
So cool. Greg Challis shows that a methylenomycin precursor is a better antibiotic than methylenomycin itself. This is in S.coelicolor A3(2)! Probably many similar examples yet to be discovered of pathways intermediates being useful, but consistently overlooked. #secmet

pubs.acs.org/doi/10.1021/...
Discovery of Late Intermediates in Methylenomycin Biosynthesis Active against Drug-Resistant Gram-Positive Bacterial Pathogens
The methylenomycins are highly functionalized cyclopentanone antibiotics produced by Streptomyces coelicolor A3(2). A biosynthetic pathway to the methylenomycins has been proposed based on sequence analysis of the proteins encoded by the methylenomycin biosynthetic gene cluster and the incorporation of labeled precursors. However, the roles played by putative biosynthetic enzymes remain experimentally uninvestigated. Here, the biosynthetic functions of enzymes encoded by mmyD, mmyO, mmyF, and mmyE were investigated by creating in-frame deletions in each gene and investigating the effect on methylenomycin production. No methylenomycin-related metabolites were produced by the mmyD mutant, consistent with the proposed role of MmyD in an early biosynthetic step. The production of methylenomycin A, but not methylenomycin C, was abolished in the mmyF and mmyO mutants, consistent with the corresponding enzymes catalyzing the epoxidation of methylenomycin C, as previously proposed. Expression of mmyF and mmyO in a S. coelicolor M145 derivative engineered to express mmr, which confers methylenomycin resistance, enabled the resulting strain to convert methylenomycin C to methylenomycin A, confirming this hypothesis. A novel metabolite (premethylenomycin C), which readily cyclizes to form the corresponding butanolide (premethylenomycin C lactone), accumulated in the mmyE mutant, indicating the corresponding enzyme is involved in introducing the exomethylene group into methylenomycin C. Remarkably, both premethylenomycin C and its lactone precursor were one to two orders of magnitude more active against various Gram-positive bacteria, including antibiotic-resistant Staphylococcus aureus and Enterococcus faecium isolates, than methylenomycins A and C, providing a promising starting point for the development of novel antibiotics to combat antimicrobial resistance.
pubs.acs.org
November 4, 2025 at 6:38 PM
Reposted by Dan Udwary
Last chance to turn it off.

On Monday, November 3rd, Microsoft will start using your LinkedIn data for AI training. And remember, you're opted in by default.

To toggle it off 👉 Account - Settings & Privacy > Data privacy > Data for Generative AI Improvement.
October 31, 2025 at 1:37 PM
Reposted by Dan Udwary
No no no, don't you get it, this isn't just hype, this isn't just a bubble, it's a TULIP BULB REVOLUTION!

Tulips will be EVERYWHERE and they will completely TRANSFORM OUR WAY OF LIFE
October 31, 2025 at 2:08 PM
The Secondary Metabolism feed is doing some surprising numbers and shows very solid growth from where it started! 70-150 of you are hitting it daily!

Reminder that if you want your post to go into the feed immediately, don't JUST use the term 'natural product'. At least use #natprod or #secmet
October 22, 2025 at 2:06 PM
Reposted by Dan Udwary
Calling all Marine Natural Products people! See you in México!
#MaNaPro2026 #RivieraMaya
October 21, 2025 at 9:07 PM
It integrates with Benchling. I can't possibly see how letting an LLM document your research could possibly go wrong... 🙄
October 20, 2025 at 9:53 PM