Shabaz Lab
@shabazlab.bsky.social
Reposted by Shabaz Lab
News in Proteomics Research blog post | Prosit-PTM! Deep learn modified peptides??? proteomicsnews.blogs...
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#proteomics #prot-other
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#proteomics #prot-other
November 26, 2025 at 9:00 AM
News in Proteomics Research blog post | Prosit-PTM! Deep learn modified peptides??? proteomicsnews.blogs...
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#proteomics #prot-other
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#proteomics #prot-other
Reposted by Shabaz Lab
Early bird registration for the #EuBIC2026 Winter School has been extended until 10 December 2025. Register now!
#Proteomics #MassSpectrometry #Bioinformatics
#Proteomics #MassSpectrometry #Bioinformatics
November 25, 2025 at 10:07 PM
Early bird registration for the #EuBIC2026 Winter School has been extended until 10 December 2025. Register now!
#Proteomics #MassSpectrometry #Bioinformatics
#Proteomics #MassSpectrometry #Bioinformatics
Reposted by Shabaz Lab
The pursuit of ultrasensitive phosphoproteomics to unravel signalling in rare cells #nature #MassSpecRSS
The pursuit of ultrasensitive phosphoproteomics to unravel signalling in rare cells - Communications Biology
A review of recent innovations driving low-input phosphoproteomics, focusing on miniaturized workflows, multiplexed labelling, automated enrichment, and advanced acquisition methods for scarce biological material.
dlvr.it
November 23, 2025 at 5:02 AM
The pursuit of ultrasensitive phosphoproteomics to unravel signalling in rare cells #nature #MassSpecRSS
Plur1bus is cooking nicely.
November 21, 2025 at 9:27 PM
Plur1bus is cooking nicely.
The Brixen Summer School is back and is, as usual, building up a strong speaker list. Thank you @eupaproteomics.bsky.social @thermofishersci.bsky.social @biognosys.bsky.social @ionopticks.bsky.social @evosep.bsky.social for support!
November 21, 2025 at 9:54 AM
The Brixen Summer School is back and is, as usual, building up a strong speaker list. Thank you @eupaproteomics.bsky.social @thermofishersci.bsky.social @biognosys.bsky.social @ionopticks.bsky.social @evosep.bsky.social for support!
Reposted by Shabaz Lab
So wonderful to finally meet Prof Angela Russell today - and see her final stop on her RSC Jeremy Knowles Prize tour. Absolutely inspirational talk about her experiences in the drug development process. Grateful for her insights and advice.
November 19, 2025 at 3:23 PM
So wonderful to finally meet Prof Angela Russell today - and see her final stop on her RSC Jeremy Knowles Prize tour. Absolutely inspirational talk about her experiences in the drug development process. Grateful for her insights and advice.
Reposted by Shabaz Lab
Exited to share our latest work! Out now in @natcomms.nature.com
Koina aims to transform how #proteomics uses machine learning. You no longer need to be a tech wizard to use ML and now can easily run #ML models. Integrated with FragPipe, Skyline and EncyclopeDIA!
www.nature.com/articles/s41...
Koina aims to transform how #proteomics uses machine learning. You no longer need to be a tech wizard to use ML and now can easily run #ML models. Integrated with FragPipe, Skyline and EncyclopeDIA!
www.nature.com/articles/s41...
Koina: Democratizing machine learning for proteomics research - Nature Communications
Koina is an open-source, online platform that simplifies access to machine learning models in proteomics, enabling easier integration into analysis tools and helping researchers adopt and reuse ML mod...
www.nature.com
November 11, 2025 at 8:06 PM
Exited to share our latest work! Out now in @natcomms.nature.com
Koina aims to transform how #proteomics uses machine learning. You no longer need to be a tech wizard to use ML and now can easily run #ML models. Integrated with FragPipe, Skyline and EncyclopeDIA!
www.nature.com/articles/s41...
Koina aims to transform how #proteomics uses machine learning. You no longer need to be a tech wizard to use ML and now can easily run #ML models. Integrated with FragPipe, Skyline and EncyclopeDIA!
www.nature.com/articles/s41...
Saw this amazing write up and just had to share 😉 (also is that an lcq?)
www.asbmb.org/asbmb-today/...
www.asbmb.org/asbmb-today/...
New chemical strategy boosts accuracy in proteomics
Researchers develop a methylamine-based method that nearly eliminates peptide overlabeling in proteomics, improving accuracy in protein identification and quantitation.
www.asbmb.org
November 8, 2025 at 9:59 PM
Saw this amazing write up and just had to share 😉 (also is that an lcq?)
www.asbmb.org/asbmb-today/...
www.asbmb.org/asbmb-today/...
Didn't realise until now that 'gift' from my partner were @biognosys.bsky.social socks. Cheapo.
November 8, 2025 at 2:58 PM
Didn't realise until now that 'gift' from my partner were @biognosys.bsky.social socks. Cheapo.
Reposted by Shabaz Lab
Fantastic project led by @bo-wen.bsky.social. Excited to see the future uses of AI and transfer learning in proteomics. #massspec #proteomics
www.nature.com/articles/s41...
www.nature.com/articles/s41...
Carafe enables high quality in silico spectral library generation for data-independent acquisition proteomics - Nature Communications
Accurate spectral libraries are essential for analyzing data-independent acquisition (DIA) proteomics data. Here, the authors present Carafe, which trains on DIA data to build experiment-specific spec...
www.nature.com
November 6, 2025 at 3:49 PM
Fantastic project led by @bo-wen.bsky.social. Excited to see the future uses of AI and transfer learning in proteomics. #massspec #proteomics
www.nature.com/articles/s41...
www.nature.com/articles/s41...
Reposted by Shabaz Lab
Very sad to see the major university in the East Midlands 'suspending' (i.e. planning to close) key courses like Modern Languages and Music and scaling back Nursing. It's a scandal that top universities are just being left to go to the wall after years of underfunding.
www.bbc.co.uk/news/article...
www.bbc.co.uk/news/article...
Music and modern languages courses suspended at University of Nottingham
In a statement the institution also says it is
www.bbc.co.uk
November 6, 2025 at 8:05 PM
Very sad to see the major university in the East Midlands 'suspending' (i.e. planning to close) key courses like Modern Languages and Music and scaling back Nursing. It's a scandal that top universities are just being left to go to the wall after years of underfunding.
www.bbc.co.uk/news/article...
www.bbc.co.uk/news/article...
Reposted by Shabaz Lab
The Wellcome Trust has awarded a prestigious Discovery Award to Professor Matt Higgins to support his research on “Molecular mechanisms of erythrocyte invasion in malaria”. 👏👏👏 Read the full story: ⬇️
Wellcome Discovery Award secured for ground-breaking malaria research
The Wellcome Trust gives Discovery Award to Professor Matt Higgins to support his "Molecular mechanisms of erythrocyte invasion in malaria" research
bit.ly
November 6, 2025 at 11:21 AM
The Wellcome Trust has awarded a prestigious Discovery Award to Professor Matt Higgins to support his research on “Molecular mechanisms of erythrocyte invasion in malaria”. 👏👏👏 Read the full story: ⬇️
Knowledge! Oxford Blackwell's Norrington room
November 6, 2025 at 11:32 AM
Knowledge! Oxford Blackwell's Norrington room
Reposted by Shabaz Lab
How can we study target engagement and selectivity of covalent inhibitors? Which electrophilic probes are best suited to study a certain amino acid?
Our study on "Profiling the proteome-wide selectivity of diverse electrophiles" is published in Nature Chemistry.(1/7)
www.nature.com/articles/s41...
Our study on "Profiling the proteome-wide selectivity of diverse electrophiles" is published in Nature Chemistry.(1/7)
www.nature.com/articles/s41...
Profiling the proteome-wide selectivity of diverse electrophiles - Nature Chemistry
Covalent inhibitors are powerful entities in drug discovery. Now the amino acid selectivity and reactivity of a diverse electrophile library have been assessed proteome-wide using an unbiased workflow...
www.nature.com
October 30, 2025 at 10:27 AM
How can we study target engagement and selectivity of covalent inhibitors? Which electrophilic probes are best suited to study a certain amino acid?
Our study on "Profiling the proteome-wide selectivity of diverse electrophiles" is published in Nature Chemistry.(1/7)
www.nature.com/articles/s41...
Our study on "Profiling the proteome-wide selectivity of diverse electrophiles" is published in Nature Chemistry.(1/7)
www.nature.com/articles/s41...
Reposted by Shabaz Lab
Reposted by Shabaz Lab
Join us Nov. 3–4 for the #ASMSFallWorkshop on Fundamentals of Instrumentation. This 2-day program offers an in-depth look at the essential technologies that drive modern mass spectrometry from ion sources to analyzers and detectors.
This is an IN-PERSON event. Register here: https://bit.ly/4okbr41
This is an IN-PERSON event. Register here: https://bit.ly/4okbr41
Fall Workshop Homepage
Help us promote the workshop:
www.asms.org
October 20, 2025 at 7:54 PM
Join us Nov. 3–4 for the #ASMSFallWorkshop on Fundamentals of Instrumentation. This 2-day program offers an in-depth look at the essential technologies that drive modern mass spectrometry from ion sources to analyzers and detectors.
This is an IN-PERSON event. Register here: https://bit.ly/4okbr41
This is an IN-PERSON event. Register here: https://bit.ly/4okbr41
Reposted by Shabaz Lab
🧵(4/7)
🔬 We have put together a fascinating #Keynote #Speakers team:
• Prof. Albert Heck - @hecklab.bsky.social
• Dr. Hamish Stewart - @hamishs.bsky.social
• Prof. Olga Vitek - @olgavitek.bsky.social l
• Prof. Ron M.A. Heeren
🔬 We have put together a fascinating #Keynote #Speakers team:
• Prof. Albert Heck - @hecklab.bsky.social
• Dr. Hamish Stewart - @hamishs.bsky.social
• Prof. Olga Vitek - @olgavitek.bsky.social l
• Prof. Ron M.A. Heeren
October 15, 2025 at 5:18 AM
🧵(4/7)
🔬 We have put together a fascinating #Keynote #Speakers team:
• Prof. Albert Heck - @hecklab.bsky.social
• Dr. Hamish Stewart - @hamishs.bsky.social
• Prof. Olga Vitek - @olgavitek.bsky.social l
• Prof. Ron M.A. Heeren
🔬 We have put together a fascinating #Keynote #Speakers team:
• Prof. Albert Heck - @hecklab.bsky.social
• Dr. Hamish Stewart - @hamishs.bsky.social
• Prof. Olga Vitek - @olgavitek.bsky.social l
• Prof. Ron M.A. Heeren
Reposted by Shabaz Lab
My latest story on the multitude of reference genomes.
www.nature.com/articles/s41...
www.nature.com/articles/s41...
Choose your human genome reference wisely - Nature Methods
Scientists can choose between multiple human genome references, and a pangenome reference is coming. Deciding what to use when is not quite straightforward.
www.nature.com
October 13, 2025 at 1:24 PM
My latest story on the multitude of reference genomes.
www.nature.com/articles/s41...
www.nature.com/articles/s41...
Reposted by Shabaz Lab
Reposted by Shabaz Lab
Independent research fellowships leading to tenured positions at the John Innes Centre.
Repost = nice. Thank you very much!!!
Repost = nice. Thank you very much!!!
Shortlisted candidates will be invited to give a seminar at the Fellows Conference, which will be held on 10 March 2026.
Candidates who win Fellowships will be offered a Tenure Track Group Leader position from the outset, initially for 5 years.
Find out more: www.jic.ac.uk/training-car...
Candidates who win Fellowships will be offered a Tenure Track Group Leader position from the outset, initially for 5 years.
Find out more: www.jic.ac.uk/training-car...
Independent Research Fellowships Leading to Tenured Faculty Positions | John Innes Centre
The John Innes Centre (JIC), is a world leading centre of excellence in plant and microbial sciences based on the Norwich Research Park, UK. We are inviting applications from outstanding researchers…
www.jic.ac.uk
October 3, 2025 at 4:06 PM
Independent research fellowships leading to tenured positions at the John Innes Centre.
Repost = nice. Thank you very much!!!
Repost = nice. Thank you very much!!!
Reposted by Shabaz Lab
Good to see better integration of (low bias) industry employees within publishing and scientific societies.
(JASMS) [ASAP] ASMS from an Editor-in-Chief’s Perspective: Welcoming an Industrial Associate Editor to the JASMS Team: Journal of the American Society for Mass SpectrometryDOI: 10.1021/jasms.5c00291 (RSS) #MassSpecRSS #JASMS
[ASAP] ASMS from an Editor-in-Chief’s Perspective: Welcoming an Industrial Associate Editor to the JASMS Team
Journal of the American Society for Mass SpectrometryDOI: 10.1021/jasms.5c00291
dlvr.it
October 3, 2025 at 10:09 PM
Good to see better integration of (low bias) industry employees within publishing and scientific societies.
There is a point during the creation of a manuscript that I stop caring about typos, perfect language and figures. I just want it gone. Definitely not a perfectionist.
October 3, 2025 at 2:55 PM
There is a point during the creation of a manuscript that I stop caring about typos, perfect language and figures. I just want it gone. Definitely not a perfectionist.
Reposted by Shabaz Lab
Having a great time at msandm2025.org with a great bunch of people interesting in visualizing biomolecules, together with my co-chairs @joostsnijder.bsky.social @vixklen.bsky.social & Kyle Fort. Learning so much from all posters & lectures. We thanks all participants for joining us in Utrecht.
October 2, 2025 at 1:13 PM
Having a great time at msandm2025.org with a great bunch of people interesting in visualizing biomolecules, together with my co-chairs @joostsnijder.bsky.social @vixklen.bsky.social & Kyle Fort. Learning so much from all posters & lectures. We thanks all participants for joining us in Utrecht.
Reposted by Shabaz Lab
Check out this thread from @haopengxiao.bsky.social on his recent paper! I’m happy I was able to help out on what has turned out to be a really cool story.
We developed a MS and machine learning approach to globally identify protein regulators of metabolism. We found protein LRRC58 controls cellular cysteine catabolism by mediating degradation of CDO1, the rate-limiting enzyme of the catabolic cysteine shunt to taurine. www.nature.com/articles/s41...
Covariation MS uncovers a protein that controls cysteine catabolism - Nature
A mass spectrometry-based approach globally identifies protein regulators of metabolism and reveals the role of LRRC58 in controlling cysteine catabolism.
www.nature.com
September 18, 2025 at 8:43 PM
Check out this thread from @haopengxiao.bsky.social on his recent paper! I’m happy I was able to help out on what has turned out to be a really cool story.