Ahmed Hasan
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ahmedrhasan.bsky.social
Ahmed Hasan
@ahmedrhasan.bsky.social
Bioinformatics, functional genomics, software eng, some ML. Formerly PhD in pop gen of recombination rate variation at UToronto. Digs #rstats, Python, open science, vim bindings, guitars.

1/2 of Red Graves:
redgraves.ampwall.com
redgraves.bandcamp.com
Reposted by Ahmed Hasan
Professional societies keep beclowning themselves buying into a lie about what an LLM "summary" is. They are inherently counterfeit: not an epistemic product of the ideas in the source, but summary-shaped text linguistically based on *other* works (in the training corpus) that use related language.
This is one of the reasons I remain horrified by seeing @historians.org suggest "ways to use gAI" that included this:
December 21, 2025 at 3:23 AM
Reposted by Ahmed Hasan
people who think they’re oh so smart are probably even more likely to succumb to the eliza effect
December 17, 2025 at 7:13 PM
Check out the new Instar EP! Was honoured to get to contribute a wee guest guitar solo on the track Brittle Bones
Oh hey, my band has a new EP out today! My poetry and short stories narrated over dreamy, adventurous prog with Travis Orbin on drums!

instar1.bandcamp.com/album/ad-ast...
Ad Astra - Part I, by Instar
3 track album
instar1.bandcamp.com
December 17, 2025 at 5:36 PM
Reposted by Ahmed Hasan
GWAS has been an incredible discovery tool for human genetics: it regularly identifies *causal* links from 1000s of SNPs to any given trait. But mechanistic interpretation is usually difficult.

Our latest work on causal models for this is out yesterday:
www.nature.com/articles/s41...
A short🧵:
Causal modelling of gene effects from regulators to programs to traits - Nature
Approaches combining genetic association and Perturb-seq data that link genetic variants to functional programs to traits are described.
www.nature.com
December 11, 2025 at 5:54 PM
Reposted by Ahmed Hasan
Intensely funny because it seems like the vast majority of people at that event were convinced it was fully autonomous and Musk has repeatedly recently claimed they're not tele-operated

www.reddit.com/r/robotics/c...
December 8, 2025 at 11:18 AM
Reposted by Ahmed Hasan
This thread up and down.

Also, I've been beating this drum about the danger to the information ecosystem for six and half years now. A few links below:
Here's the reality this example illustrates:

It's not even just about people blindly trusting what ChatGPT tells them. LLMs are poisoning the entire information ecosystem. You can't even necessarily trust that the citations in a published paper are real (or a search engine's descriptions of them).
December 7, 2025 at 9:54 PM
Reposted by Ahmed Hasan
IMO it’s weird and probably irresponsible to teach bioinformatics without some nod to the group dynamics that shaped (otherwise inexplicable) things like the GFF file format or the Gene Ontology. Not to mention why tools back then had names like BLAST and FASTA,but now are named after cuddly animals
one of the reasons that the STEM-humanitiies culture war is stupid is that there's a lot of interesting stuff there at the intersection of the two. like it's very sociologically interesting the way that programming languages are maintained, propagated, and evolve.
December 2, 2025 at 9:49 PM
Reposted by Ahmed Hasan
one of the reasons that the STEM-humanitiies culture war is stupid is that there's a lot of interesting stuff there at the intersection of the two. like it's very sociologically interesting the way that programming languages are maintained, propagated, and evolve.
December 2, 2025 at 9:23 PM
Reposted by Ahmed Hasan
Oh shit it's Bandcamp Friday!!! Please if you haven't already, check out my band's debut album. 100% of proceeds go towards recording album 2 which will be even more about toxic gay romance

redgraves.bandcamp.com/album/nightt...
Nighttime Heists / Daytime Getaways, by Red Graves
9 track album
redgraves.bandcamp.com
December 5, 2025 at 7:25 PM
Reposted by Ahmed Hasan
We can't really say this enough...

> Anastasia Berg [at UCL Irvine] said that new research — and what she's hearing directly from colleagues across various industries — shows that employees who heavily rely on AI are losing core skills at a startling rate.

www.businessinsider.com/ai-tools-are...
AI tools are 'deskilling' workers, philosophy professor says
A philosophy professor warns that AI reliance is weakening workers' judgment, creativity, and problem-solving.
www.businessinsider.com
November 30, 2025 at 6:09 PM
Reposted by Ahmed Hasan
I put together two roundups from posit::conf(2025):

• Shiny talks + full workshop materials
shiny.posit.co/blog/posts/c...

• Quarto talks playlist and summaries
quarto.org/docs/blog/po...
shiny.posit.co
December 4, 2025 at 4:48 PM
Reposted by Ahmed Hasan
Can I just fucking say, imagine if any of these people ever faced any kind of fucking consequence for just blurting out bullshit like this
“In a decade, Pichai said that it'll be normal to build extraterrestrial data centers”.

And he’s definitely not the only one speaking about the *necessity* of data centers in space. Apparently the planet is not big enough for their scaling “laws”.

www.businessinsider.com/google-proje...
Sundar Pichai says Google will start building data centers in space, powered by the sun, in 2027
Google announced Project Suncatcher earlier this month. CEO Sundar Pichai now says it could begin building data centers in space as soon as 2027.
www.businessinsider.com
December 3, 2025 at 12:50 PM
Reposted by Ahmed Hasan
"Runctitiononal features"? "Medical fymblal"? "1 Tol Line storee"? This gets worse the longer you look at it. But it's got to be good, because it was published in Nature Scientific Reports last week: www.nature.com/articles/s41... h/t @asa.tsbalans.se
November 27, 2025 at 9:30 AM
Reposted by Ahmed Hasan
evergreen
November 22, 2025 at 5:20 PM
Reposted by Ahmed Hasan
Extremely upset that a throw-away XKCD joke somehow became the organizing principle for the Internet.
November 20, 2025 at 2:31 AM
Reposted by Ahmed Hasan
this is theranos-level fraud, but everyone with the power to do anything about it is on the take, apparently
Anthropic CEO Dario Amodei thinks AI could help find cures for most cancers, prevent Alzheimer’s, and even double the human lifespan. cbsn.ws/4oRZ8Nm
November 17, 2025 at 1:22 AM
Reposted by Ahmed Hasan
if microsoft just made outlook search not suck they'd see triple the productivity gains of any AI integration
November 14, 2025 at 12:18 AM
Reposted by Ahmed Hasan
"The mainstream understanding of AI is as an interefering piece of shit which doesn't work" pt II

www.askamanager.org/2025/11/the-...
November 12, 2025 at 8:47 PM
Reposted by Ahmed Hasan
‘Study after study shows that students want to develop these critical thinking skills, are not lazy, and large numbers of them would be in favor of banning ChatGPT and similar tools in universities’, says @olivia.science www.ru.nl/en/research/...
‘Opposing the inevitability of AI at universities is possible and necessary’ | Radboud University
Since the widespread release of ChatGPT in December of 2022, AI has taken over much of the world by storm – including academia. Most of this happened with very little pushback, despite a myriad of iss...
www.ru.nl
November 1, 2025 at 10:26 PM
Reposted by Ahmed Hasan
www.nbcnews.com/tech/tech-ne...
According to the study, a significant number of top-tier benchmarks fail to define what exactly they aim to test, concerningly reuse data and testing methods from pre-existing benchmarks, and seldom use reliable statistical methods to compare results between models.
AI's capabilities may be exaggerated by flawed tests, according to new study
A study from the Oxford Internet Institute analyzed 445 tests used to evaluate AI models.
www.nbcnews.com
November 8, 2025 at 5:56 PM
Reposted by Ahmed Hasan
In case anyone is wondering if Watson was really THAT bad, @lpachter.bsky.social compiled a list of quotes that are absolutely not for the faint of heart.
liorpachter.wordpress.com/2018/05/18/j...
November 7, 2025 at 10:18 PM
Reposted by Ahmed Hasan
My favorite comment on the FT story
November 6, 2025 at 7:49 PM
Reposted by Ahmed Hasan
bro are you fucking kidding me
November 6, 2025 at 5:59 PM
Reposted by Ahmed Hasan
The extent to which AI FOMO is warping people's decisions is rather stunning, actually. I can see why the Anthropics and Googles would want this, but the other tech co managers going along with it ...
It seems like the only way tech companies are able to compel AI usage is by coercion in performance review processes?

(via The Information "AI Agenda" newsletter)
October 30, 2025 at 2:34 PM