Bharath Nair (ഭരത് നായർ)
@bharathabnair.bsky.social
330 followers
170 following
54 posts
Loves unifying art and science with philosophy. I study proteins on a spatiotemporal canvas.
https://sites.google.com/view/bharathabnair/home
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Reposted by Bharath Nair (ഭരത് നായർ)
Reposted by Bharath Nair (ഭരത് നായർ)
Ben Neely
@benneely.com
· Sep 3
Reposted by Bharath Nair (ഭരത് നായർ)
Reposted by Bharath Nair (ഭരത് നായർ)
Reposted by Bharath Nair (ഭരത് നായർ)
EvolDir
@evoldir.bsky.social
· Sep 3
Symposia - SMBE 2026 - Copenhagen Denmark
SMBE 2026 Symposia Check deadlines and important dates below. Days Hours Minutes Seconds Conference Symposia We are now accepting proposals for symposium for the 2026 Annual meeting taking place in Copenhagen, Denmark. Selection of proposals will prioritize the interests of SMBE members, emphasizing innovative scientific developments while ensuring geographic and gender diversity among the participants. […]
smbe2026.org
Reposted by Bharath Nair (ഭരത് നായർ)
Reposted by Bharath Nair (ഭരത് നായർ)
Reposted by Bharath Nair (ഭരത് നായർ)
Sam Brown
@drsambrown.bsky.social
· Aug 28
MALDI Deamidation Score (MDS): A Fast and Flexible Method for Assessing Deamidation in ZooMS Data and Its Application to the Denisova Cave Bone Assemblage
Estimating deamidation from MALDI-TOF MS spectra of bones has most frequently been achieved using the q2e method due to its high-throughput capacity and ease of use. Despite this accessibility, q2e is...
www.biorxiv.org
Reposted by Bharath Nair (ഭരത് നായർ)
Reposted by Bharath Nair (ഭരത് നായർ)
Reposted by Bharath Nair (ഭരത് നായർ)
Reposted by Bharath Nair (ഭരത് നായർ)
Reposted by Bharath Nair (ഭരത് നായർ)
John Hawks
@johnhawks.net
· Aug 19
Reposted by Bharath Nair (ഭരത് നായർ)
Reposted by Bharath Nair (ഭരത് നായർ)
Alison Chaves
@alisonchaves.bsky.social
· Aug 15
PSManalyst: A Dashboard for Visual Quality Control of FragPipe Results
FragPipe is recognized as one of the fastest computational platforms in proteomics, making it a practical solution for the rapid quality control of high-throughput sample analyses. Starting with version 23.0, FragPipe introduced the “Generate Summary Report” feature, offering .pdf reports with essential quality control metrics to address the challenge of intuitively assessing large-scale proteomics data. While traditional spreadsheet formats (e.g., tsv files) are accessible, the complexity of the data often limits user-friendly interpretation. To further enhance accessibility, PSManalyst, a Shiny-based R application, was developed to process FragPipe output files (psm.tsv, protein.tsv, and combined_protein.tsv) and provide interactive, code-free data visualization. Users can filter peptide-spectrum matches (PSMs) by quality scores, visualize protease cleavage fingerprints as heatmaps and SeqLogos, and access a range of quality control metrics and representations such as peptide length distributions, ion densities, mass errors, and wordclouds for overrepresented peptides. The tool facilitates seamless switching between PSM and protein data visualization, offering insights into protein abundance discrepancies, samplewise similarity metrics, protein coverage, and contaminants evaluation. PSManalyst leverages several R libraries (lsa, vegan, ggfortify, ggseqlogo, wordcloud2, tidyverse, ggpointdensity, and plotly) and runs on Windows, MacOS, and Linux, requiring only a local R setup and an IDE. The app is available at (https://github.com/41ison/PSManalyst.
pubs.acs.org
Reposted by Bharath Nair (ഭരത് നായർ)
Sam Brown
@drsambrown.bsky.social
· Aug 1
Paleoproteomics in Atapuerca - Diálogos Sapiens - Sapiens Dialogues - Podcast on iVoox
Listen and download Diálogos Sapiens - Sapiens Dialogues episodes for free. 22nd episode of Sapiens Dialogues. This is the fourth dialogue of the fourth season. The paleoproteomics specialist Prof. Ma...
www.ivoox.com
Reposted by Bharath Nair (ഭരത് നായർ)
Reposted by Bharath Nair (ഭരത് നായർ)
Reposted by Bharath Nair (ഭരത് നായർ)
Jacobin
@jacobinmag.bsky.social
· Aug 11
Kerala Is Still the Stronghold of India’s Communist Movement
Narendra Modi’s government is aggressively hostile to the communist-led left-wing alliance that holds power in Kerala because it has a remarkable track record of improving living standards for its people, unlike Modi and his Hindutva cronies.
jacobin.com