Bharath Nair (ഭരത് നായർ)
@bharathabnair.bsky.social
330 followers 170 following 54 posts
Loves unifying art and science with philosophy. I study proteins on a spatiotemporal canvas. https://sites.google.com/view/bharathabnair/home
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Reposted by Bharath Nair (ഭരത് നായർ)
disabilitystor1.bsky.social
lol what?
This just tells me how bad Marriott's reading and media consumption habits are, because it feels like more academics are doing public scholarship than ever!
Maybe they're not all "Great White Scholar" types, but they're there, and doing the work.
Academics are also disappearing from public life. In my teens it was possible to assemble virtually a whole amateur curriculum via Mary Beard (classics), Steven Pinker (psychology), Richard Dawkins (biology), John Carey (literature). Now I struggle to name any prominent academics under 50, let alone under 40.
Reposted by Bharath Nair (ഭരത് നായർ)
benneely.com
Alright, help from my "wider" mass tolerance peeps ( @pwilmarth.bsky.social @ypriverol.bsky.social @michaellazear.bsky.social): I have confirmed what you all said that 1.25 Da MS1 and 20 ppm MS2 is a winning DDA combination. But I see in MSFragger I can do an upper and lower. Do +- 1.25 Da on MS1?
Reposted by Bharath Nair (ഭരത് നായർ)
pracheeac.bsky.social
While journal publishing has always been deeply problematic, hurting both the pace and trajectory of science, something is happening in this moment that is finally causing the system to crumble under its own weight and cost.
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Reposted by Bharath Nair (ഭരത് നായർ)
higherjobz.bsky.social
Advanced Technician (Archaeological Laboratories) – Durham University, UK
Permanent archaeology lab technician role
Eligibility: Degree in Archaeology
Deadline: 17 Sept 2025
Details: higherjobz.com/archaeology-...

#AcademicJobs #ArchaeologyCareers #UKJobs #PermanentRole #ResearchJobs
Archaeology Lab Technician Job at Durham University | HigherJobz
Apply now for Archaeology Lab Technician at Durham University, UK. Full-time permanent role in Archaeology. Deadline: 17 Sept 2025.
higherjobz.com
bharathabnair.bsky.social
Chuffed to have participated in the Nordic Conference on Mass Spectrometry and Proteomics 2025 in Odense - "the birth place of proteomics". Also, massive congrats to Amalie to winning the Best Poster Award. @markersofpollution.bsky.social - grateful for the support!
Reposted by Bharath Nair (ഭരത് നായർ)
paastacommunity.bsky.social
Following a marvelous time at ISBA11 and our PAASTA conference, we're back to sharing the work of our community with you here!

@ipatramanis.bsky.social PAASTA talk from March about PaleoProPhyler a tool for #phylogenies from ancient proteins is now live on our YouTube youtu.be/2gVEQyinL4A
PAASTA Seminar Series - Ioannis Patramanis
YouTube video by PAASTA community
youtu.be
Reposted by Bharath Nair (ഭരത് നായർ)
matthewcollins.bsky.social
Thanks to @isbarchaeology.bsky.social and @isba11.bsky.social for a great conference.

I mentioned the legacy of Henk Kars of VU who established ISBA

Geoarchaeology closed. Here is the link to the petition to save Earth Sciences @vuamsterdam.bsky.social

www.change.org/p/red-aardwe...
More than 500 international scholars attended ISBA 11.  Here are many of them looking up at the camera in a large group shot
Reposted by Bharath Nair (ഭരത് നായർ)
pciarchaeology.bsky.social
PCI Archaeology was at @isba11.bsky.social in Turin last week! Stay tuned for new #openaccess biomolecular papers soon with full transparency in the editorial process!

Thank you @matthewcollins.bsky.social and Marta Arzarello for sharing our initiative!
@isbarchaeology.bsky.social 🧪🏺🦣
Picture of the roll-up presenteing PCI Archaeology during the congress, and of the ISBA11 tote bag.
Reposted by Bharath Nair (ഭരത് നായർ)
kkmurray.bsky.social
(JASMS) [ASAP] Simulating Collision-Induced Dissociation Tandem Mass Spectrometry (CID-MS/MS) for the Blood Exposome Database Using Quantum Chemistry Methods - A Pilot Study: Journal of the American Society for Mass SpectrometryDOI: 10.1021/jasms.5c00179 (RSS) #MassSpecRSS #JASMS
[ASAP] Simulating Collision-Induced Dissociation Tandem Mass Spectrometry (CID-MS/MS) for the Blood Exposome Database Using Quantum Chemistry Methods - A Pilot Study
Journal of the American Society for Mass SpectrometryDOI: 10.1021/jasms.5c00179
dlvr.it
Reposted by Bharath Nair (ഭരത് നായർ)
pciarchaeology.bsky.social
⬇️⬇️⬇️
Also worth reading for other domains than health sciences! 👏
matthieuboisgontier.com
Rethinking where and how we publish in health sciences doi.org/10.51224/SRX...
Reposted by Bharath Nair (ഭരത് നായർ)
bbonucci.bsky.social
🚨Thrilled to share our new paper!!
We were able to retrieve ancient DNA and proteins from layers of sediment attached to the skeletal remains of individuals from a Neolithic site from Southern Italy 💀🧬🦠
www.cell.com/iscience/ful...
Ancient microbial DNA and proteins preserve in concretions covering human remains
Microbiome; Omics; Proteomics; Archeology
www.cell.com
Reposted by Bharath Nair (ഭരത് നായർ)
petergleick.bsky.social
Do not trust AI or ChatGPT-5 to do the most basic things like labeling a picture of the hydrologic cycle. Here's what it gave me.
(Evaporation arrow pointing into the ground. Both surface water and the "ocean" labels underground. Transpiration arrow coming from the #water surface, not plants...]
Reposted by Bharath Nair (ഭരത് നായർ)
johnhawks.net
Our distant ancestors sometimes did things tens or hundreds of thousands of years ago, leaving incidental traces that we sometimes are lucky enough to notice. Whatever they were doing, it was almost certainly not their intention to be noticed by us.
Reposted by Bharath Nair (ഭരത് നായർ)
zandraselina.bsky.social
Registration deadline is TOMORROW! 🍝 🏺
paastacommunity.bsky.social
✨✨Reminder that we are hosting a (virtual and in-person) pre-ISBA conference✨✨ on the 26th of August (13:00-17:00 CET) which will include talks from members of our community and the PAASTA Annual General Meeting. Additional details can be found here: paasta-community.github.io/events/2025/...
Pre-ISBA PAASTA Conference · PAASTA Community
paasta-community.github.io
Reposted by Bharath Nair (ഭരത് നായർ)
alisonchaves.bsky.social
It's now properly published. If you want to easily check important characteristics of your data before diving into complicated statistics, check out PSManalyst.

PSManalyst: A Dashboard for Visual Quality Control of FragPipe Results | Journal of Proteome Research pubs.acs.org/doi/10.1021/...
PSManalyst: A Dashboard for Visual Quality Control of FragPipe Results
FragPipe is recognized as one of the fastest computational platforms in proteomics, making it a practical solution for the rapid quality control of high-throughput sample analyses. Starting with version 23.0, FragPipe introduced the “Generate Summary Report” feature, offering .pdf reports with essential quality control metrics to address the challenge of intuitively assessing large-scale proteomics data. While traditional spreadsheet formats (e.g., tsv files) are accessible, the complexity of the data often limits user-friendly interpretation. To further enhance accessibility, PSManalyst, a Shiny-based R application, was developed to process FragPipe output files (psm.tsv, protein.tsv, and combined_protein.tsv) and provide interactive, code-free data visualization. Users can filter peptide-spectrum matches (PSMs) by quality scores, visualize protease cleavage fingerprints as heatmaps and SeqLogos, and access a range of quality control metrics and representations such as peptide length distributions, ion densities, mass errors, and wordclouds for overrepresented peptides. The tool facilitates seamless switching between PSM and protein data visualization, offering insights into protein abundance discrepancies, samplewise similarity metrics, protein coverage, and contaminants evaluation. PSManalyst leverages several R libraries (lsa, vegan, ggfortify, ggseqlogo, wordcloud2, tidyverse, ggpointdensity, and plotly) and runs on Windows, MacOS, and Linux, requiring only a local R setup and an IDE. The app is available at (https://github.com/41ison/PSManalyst.
pubs.acs.org
Reposted by Bharath Nair (ഭരത് നായർ)
Reposted by Bharath Nair (ഭരത് നായർ)
Reposted by Bharath Nair (ഭരത് നായർ)
jacobinmag.bsky.social
Narendra Modi’s government is aggressively hostile to the communist-led left-wing alliance that holds power in Kerala because it has a remarkable track record of improving living standards for its people, unlike Modi and his Hindutva cronies.
Kerala Is Still the Stronghold of India’s Communist Movement
Narendra Modi’s government is aggressively hostile to the communist-led left-wing alliance that holds power in Kerala because it has a remarkable track record of improving living standards for its people, unlike Modi and his Hindutva cronies.
jacobin.com