Camille Roux
@crouxevo.bsky.social
200 followers 230 following 8 posts
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Reposted by Camille Roux
vincentcastric.bsky.social
Very happy to announce that the next POPGROUP meeting will take place in Lille on 7-9 January !

Follow ‪@popgroup2026.bsky.social for all updates.

📢 Please share widely ! 📢‬
popgroup2026.bsky.social
Exciting news!
The next #PopGroup meeting will take place in Lille 🍟, France, 7–9 January 2026 – just 1 hour by train from London, Brussels, and Paris.

This year, PopGroup will also host ALPHY, the annual meeting of Evolutionary Genomics.

More info: populationgeneticsgroup.org.uk

See you there !
Population Genetics group 59
populationgeneticsgroup.org.uk
Reposted by Camille Roux
popgroup2026.bsky.social
Exciting news!
The next #PopGroup meeting will take place in Lille 🍟, France, 7–9 January 2026 – just 1 hour by train from London, Brussels, and Paris.

This year, PopGroup will also host ALPHY, the annual meeting of Evolutionary Genomics.

More info: populationgeneticsgroup.org.uk

See you there !
Population Genetics group 59
populationgeneticsgroup.org.uk
Reposted by Camille Roux
arnaudlerouzic.bsky.social
Come and join our team! A 2-year postdoc position is available in our "Genome Evolution" department at Univ Paris Saclay. We want to play with phylogenetic models accounting for horizontal transfers of transposable elements. Application& details on the official portal: emploi.cnrs.fr/Offres/CDD/U...
Object: Postdoc Position 

Building a phylogenetic model for horizontal transfers of transposable elements 

A postdoctoral position (24 months) is available to work at EGCE (Gif-sur-Yvette, France, CNRS / Université Paris-Saclay) from January 2026. 

Transposable elements (TEs) are repetitive DNA sequences capable of promoting their own mobility. They are widespread across the tree of life and often represent a substantial fraction of eukaryotic genomes. Beyond their ability to invade genomes, TEs are frequently reported to undergo horizontal transfer, enabling their colonization of new hosts. However, understanding and predicting how horizontal transfers shape the distribution of TEs among species is far from straightforward. In particular, estimates of transfer rates based on documented cases are both biased and approximate, since transfers occurring close to speciation events are virtually undetectable. This project aims to develop explicit phylogenetic models of TE evolution that incorporate horizontal transfers, and to use these models to obtain statistical estimates of key evolutionary dynamics of TE families across species (e.g., horizontal transfer and extinction rates). The postdoctoral project will focus on exploring the impact of horizontal transfers on the distribution of TE presence/absence among related species, using statistical and/or computational approaches. Context

The position will be part of a 4-year collaborative project funded by the French National Agency (ANR). The research consortium gathers two departments (from Paris-Saclay university and from Université Lyon 1), and involves 7 Pls and 5 postdocs and PhD students devoted to distinct workpackages of the project. The postdoc will be based at EGCE, which is part of the Institute for Ecology and Evolution (IDEEV). The institute offers an exciting and active scientific life, it is located on the new research campus of Paris-Saclay, 35 km south of Paris. 

Relevant references

Gilbert C et al. 2018. Horizontal acquisition of transposable elements and viral sequences: patterns and consequences. Cur. Opin. Genet. Dev. 49:15-24.

Le Rouzic A et al. 2013. Reconstructing the Evolutionary History of Transposable Elements. Genome Biol. Evol. 5:77-86.

Wallau GL et al. 2016. VHICA, a New Method to Discriminate between Vertical and Horizontal Transposon Transfer: Application to the Mariner Family within Drosophila. Mol Biol Evol 33:1094-1109.

Profile

We are looking for a motivated early career theoretical biologist, with a PhD in theoretical evolutionary biology. Skills in statistics, programming, bio-informatics, and phylogenetic models will be appreciated.

Application

Formal applications (CV and cover letter) have to be deposited on the CNRS job portal https://emploi.cnrs.fr/Offres/CDD/UMR9191-ARNLER-006/Default.aspx?lang=EN.
Reposted by Camille Roux
selfishmeme.bsky.social
If you’ve heard about our study on ants producing two different species but are still confused about how it works (and don’t have time to read the paper), this 10-minute video made by @bengthomas.bsky.social is very informative:
www.youtube.com/watch?v=Z-O4...

Paper: www.nature.com/articles/s41...
The Ants That Broke Biology
YouTube video by 7 Days of Science
www.youtube.com
crouxevo.bsky.social
Thanks!
The study looked at 20 vertebrate pairs and 41 invertebrate pairs. In the original paper focused on animals (2016, time flies...), the comparison showed no effect based on whether they were vertebrates or invertebrates, or on their r/K ecological strategy.
journals.plos.org/plosbiology/...
Shedding Light on the Grey Zone of Speciation along a Continuum of Genomic Divergence
Author Summary Isolated populations accumulate genetic differences across their genomes as they diverge, whereas gene flow between populations counteracts divergence and tends to restore genetic homog...
journals.plos.org
crouxevo.bsky.social
This allowed us to link molecular divergence with genetic connectivity in plants and animals. (A) Gene flow stops sooner between plant species than between animal species. (B) Genomic barriers emerge faster in plant genomes than in animals.
crouxevo.bsky.social
Using population genomic approaches, we measured (A) average genomic divergence and (B) the probability that each plant or animal pair corresponds to: (2) two populations of the same species, (3) a complex of semi-isolated species, or (4) two fully isolated species
crouxevo.bsky.social
In this study, we analyzed the demographic histories of 280 plant pairs and 61 animal pairs using genomic data describing both intraspecific polymorphism and interspecific divergence
crouxevo.bsky.social
Hybridization and introgression are major evolutionary processes. Since the 1940s, the prevailing view has been that they shape plants far more than animals. In our new study (www.science.org/doi/10.1126/...
), we find the opposite: animals exchange genes more, and for longer, than plants
Reposted by Camille Roux
siluwang.bsky.social
Why do speciation rates vary across the tree of life?
Some of the best yet most underappreciated places for this investigation are natural hybrid zones.
This preprint takes you to the hybrid zones in the origin of species to find a clue. 👉 shorturl.at/N7FXE
#Speciation #Evolution #hybridization
Reposted by Camille Roux
siluwang.bsky.social
Such distinct demographic and evolutionary processes in mitochondrial and nuclear genomes have significant consequences for the origin of species boundaries, which we have discussed in a recent review. #speciation #genomics #evolution onlinelibrary.wiley.com/doi/10.1111/...
Reposted by Camille Roux
siluwang.bsky.social
To account for the independent & interactive effects of mitochondrial & nuclear substitutions on the selection against hybrid DNA, we propose to refine the three speciation rate models into the Endosymbiotic Speciation Rate Models to have Kn and Km explicitly. #speciation #evolution
Reposted by Camille Roux
yun-s-song.bsky.social
SINGER, our ARG inference method, is finally published and freely available online:

doi.org/10.1038/s415...

It was a long journey – 16 months from initial submission to acceptance. Is it just me, or has peer review gotten more arduous lately? 4+ rounds of review isn't so unusual these days...
Robust and accurate Bayesian inference of genome-wide genealogies for hundreds of genomes - Nature Genetics
SINGER is a method for creating ancestral recombination graphs to understand the genealogical history of genomes. The method has increased speed, and thus scalability, without sacrificing accuracy.
doi.org
Reposted by Camille Roux
judithmank.bsky.social
Genome architecture and speciation in plants and animals. I learned a lot writing this with @dortizba.bsky.social, Silu Wang and Loren Rieseberg! doi.org/10.22541/au....
Reposted by Camille Roux
Reposted by Camille Roux
naturalselection.bsky.social
[please share widely!]

We have two PhD positions available at the Swedish Museum of Natural History:

[Position 1] Birds, hybridization, genomes, island biology, biogeography, sexual selection 🦚, w/ me, Knud Jønsson, Martin Iredstedt and @stelkens.bsky.social et al
recruit.visma.com/spa/public/a...
PhD student in Evolution of Indo-Pacific birds
The Department of Bioinformatics and Genetics is offering a four-year PhD position focused on analyzing population-level genomic data from museum bird samples. The project will employ cutting-edge gen...
recruit.visma.com
crouxevo.bsky.social
Hello BlueSky!
Who wants to be my friend?
Cheers,
Camille Roux

@couplingdmi.bsky.social