Lightnews — Scholar-powered news

Reposted by Eugene Katrukha 🇺🇦

Nicolas Chiaruttini @nkiaru.bsky.social · 1d

#QuPath + Imglib2 and #BDV ❤️

Promising start!

(Mainly Léo and Pete's work github.com/qupath/qupat... + a small addition)

4 11

Reposted by Eugene Katrukha 🇺🇦

EMBO @embo.org · 1d

Learn all things #cytoskeleton #research in an interdisciplinary environment at EMBO Workshop "Structure and Function of the Cytoskeleton" in Paris, FR, 7–10 April 2026.

Deadline: 20 December 2025

https://meetings.embo.org/event/26-cytoskeleton
#EMBOCytoskeletalFunction #EMBOevents #conference 🧪

Structure and Function of the Cytoskeleton

The cytoskeleton, a dynamic and intricate network of protein filaments, is found within the cytoplasm of all cells, from bacteria and archaea to complex eukaryotes. This essential cellular component …

meetings.embo.org

29 28

Reposted by Eugene Katrukha 🇺🇦

Jean-Yves Tinevez @jytinevez.bsky.social · 1d

Job alert!

We are looking for a bioimage analysis to work in an image analysis core facility in beautiful Paris. Can I ask you to share this opportunity with your networks?

See also on the forum:
forum.image.sc/t/research-e...

Research engineer in Bioimage Analysis for the researchers of the inIdEx FORMULA

Hi all We are looking for a bioimage analysis to work in an image analysis core facility in beautiful Paris. Can I ask you to share this opportunity with your networks? The position is in the Instit...

forum.image.sc

2 72 56

Reposted by Eugene Katrukha 🇺🇦

Reto Fiolka @retof.bsky.social · 2d

We present multi-immersion Oblique Plane microscope (miOPM), a light-sheet platform that can be adapted to a wide range of applications, from sensitive live cell imaging to imaging organs and cleared tissues.
www.biorxiv.org/content/10.1...

5 43 110

Reposted by Eugene Katrukha 🇺🇦

Kevin Terretaz @kwolbachia.bsky.social · 4d

I’m happy to share some plugins I’ve been developping this summer: "Channels and Contrast" and LUTs Manager!
I can’t find new bugs and ideas by now so I need your help to please test them in your machines and report bugs, feedbacks and ideas! forum.image.sc/t/looking-fo...

6 34 92

Reposted by Eugene Katrukha 🇺🇦

Kate Cavanaugh @katecavanaugh.bsky.social · 7d

See this? This = implanting mouse embryo. Usually this happens inside its mother and is invisible to us, but we can actually watch implantation ex vivo with the hope of understanding why implantation goes awry in embryos of older women. A 🧵...

11 68 220

Eugene Katrukha 🇺🇦 @ekatrukha.bsky.social · 8d

I think his father (Pitirim) was a pretty well-known US sociologist, there is a website dedicated to him, and part of it has Sergei's memoirs about him cliffstreet.org/index.php/se...

Sergei Sorokin

cliffstreet.org

1

Eugene Katrukha 🇺🇦 @ekatrukha.bsky.social · 8d

One step at a time, first just trying to verify the upload of the LUT texture to the GPU. So I mapped it to whatever (here on a spot shape). Looks weird, but I like those intermediate "debug" results. It seems to work; now I can implement a proper depth color-coding. #bigvolumebrowser

7

Reposted by Eugene Katrukha 🇺🇦

Christophe 🔬 L @christlet.bsky.social · 8d

Beautiful drawing of ciliogenesis in airway cells from Sorokin, 1968: journals.biologists.com/jcs/article/.... Just shown on stage by @mahjoublab.bsky.social at #GEF25

2 23 76

Eugene Katrukha 🇺🇦 @ekatrukha.bsky.social · 8d

Good morning, if you didn't sleep good (on top of a cupboard)

Grumpy sleepy cat on top of the kitchen cupboard

1 6

Reposted by Eugene Katrukha 🇺🇦

Adam Glaser @adamkglaser.bsky.social · 9d

Latest imaging data from our completely re-designed ExA-SPIM system.

Expansion-assisted imaging (3X expansion, 0.3 NA) enables brain-wide imaging with high-contrast and <400 nm effective resolution.

2 8 48

Reposted by Eugene Katrukha 🇺🇦

Siân Culley @superresolusian.bsky.social · 9d

BioImage analysis friends - King's are recruiting for a full-time, permanent facility position! Come and work with fun microscopes and fun people (and me!) - please share! www.kcl.ac.uk/jobs/126345-...

Bioimage Analysis Specialist | King's College London

www.kcl.ac.uk

80 60

Reposted by Eugene Katrukha 🇺🇦

Christophe 🔬 L @christlet.bsky.social · 9d

Live stream link for today's #GEF25:
www.youtube.com/watch?v=FQmP...
Tune in to listen to Ed!

3 10

Reposted by Eugene Katrukha 🇺🇦

Nadja M. Hümpfer @nadjahuempf.bsky.social · 10d

Now out on bioRxiv. 🥳My research on #cytokinesis, averaging thousands of #ExM images🔬, creating a dynamic atlas of cytokinesis 🦠⏳. Here's an animated sneak peek of what we found. Better resolution on bioRxiv😄 #PSFoftheGIF

2 25 66

Eugene Katrukha 🇺🇦 @ekatrukha.bsky.social · 10d

Found today's #GEF25 stream, for those who follow www.youtube.com/live/Itn5oZs...

Göttingen Expansion Forum 2025 Live Stream

YouTube video by Neuroscience and Beyond

www.youtube.com

1 7

Reposted by Eugene Katrukha 🇺🇦

Ali Shaib @alishaib.bsky.social · 11d

#GEF25 LIVE BROADCAST

www.youtube.com/live/a_0X5Le...

Göttingen Expansion Forum 2025 Live Stream

YouTube video by Neuroscience and Beyond

www.youtube.com

3 5

Eugene Katrukha 🇺🇦 @ekatrukha.bsky.social · 12d

Back to work on #bigvolumebrowser, I've added the import of point clouds that change over time. The test data generation was a pleasant detour into the world of attractors (Thomas' cyclically symmetric is shown).

5 24

Reposted by Eugene Katrukha 🇺🇦

Christophe 🔬 L @christlet.bsky.social · 12d

#FluorescenceFriday: getting ready for #GEF25, playing with Ciarán's stunning ExM data

6 20 120

Reposted by Eugene Katrukha 🇺🇦

Christophe 🔬 L @christlet.bsky.social · 12d

Beautiful live-cell imaging of lysosome tubulation along microtubules in this work just out from @lysoluis.bsky.social et al:
rupress.org/jcb/article/...

1 12 46

Reposted by Eugene Katrukha 🇺🇦

Brandy A Freitas @brandy-syglass.bsky.social · 13d

👀 #3DThursday: Cross your eyes to see this super res pollen dataset in 3D! Good old fashioned stereo pairs in #syGlass bringing science to life. 🌿✨

🔬: Zeiss LSM 980 with Airyscan 2
🥼: Nat Prunet, @nat-prunet.bsky.social
🏛️: UNC Biological Microscopy Core: tarheels.live/biologymicro...
🎬: syGlass.io

2 7 29

Eugene Katrukha 🇺🇦 @ekatrukha.bsky.social · 13d

Congratulations, Nicky!

Reposted by Eugene Katrukha 🇺🇦

Christophe 🔬 L @christlet.bsky.social · 14d

Congrats to our PhD student Louis Romette, among the winners in this year's @healthcare.nikon.com Nikon Small World competition! His hard work optimizing long-term live-cell imaging of developing neurons makes for mesmerizing movies (and lots of insights)
www.nikonsmallworld.com/galleries/20...

Live 65-hour recording of rat hippocampal neuron growth | 2025 Small World in Motion Competition

Louis Romette - Live 65-hour recording of rat hippocampal neuron growth (day 3 to day 6)

www.nikonsmallworld.com

4 14 41

Reposted by Eugene Katrukha 🇺🇦

Aafke Gros @aafkegros.bsky.social · 14d

Automatic filament tracing in 3D data is now only a few clicks (or one macro) away! In the amazing #BigTrace FIJI plugin by @ekatrukha.bsky.social 🤩

My workflow will be to autotrace and then manually correct the autotraces, reducing the time for our tracing significantly!

Eugene Katrukha 🇺🇦 @ekatrukha.bsky.social · 14d

New release of #BigTrace plugin is out. Together with @aafkegros.bsky.social from Simone Köhler group we added a fully automatic tracing mode. + more macro functions and bug fixes github.com/ekatrukha/Bi...

1 4 16

Eugene Katrukha 🇺🇦 @ekatrukha.bsky.social · 14d

New release of #BigTrace plugin is out. Together with @aafkegros.bsky.social from Simone Köhler group we added a fully automatic tracing mode. + more macro functions and bug fixes github.com/ekatrukha/Bi...

8 27

Reposted by Eugene Katrukha 🇺🇦

Christophe 🔬 L @christlet.bsky.social · 15d

Up to 9-channel (3x3 colors) imaging using engineering fluorescent proteins (mTurquoise, mNeonGreen, mScarlet) with distinct lifetimes 🌈😎 🧪
www.cell.com/cell/abstrac...

3 16 75