Jogi Madhuprakash
@jmadhuprakash.bsky.social
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jmadhuprakash.bsky.social
🚨 New @biorxivpreprint alert! 🚨
We are thrilled to share our latest findings—building on our earlier work on suppressors of helper NLRs of the NRC family—a Phytophthora infestans L-shaped effector captures resistosome assembly intermediates of tomato NRC3!
www.biorxiv.org/content/10.1...
1/10
Reposted by Jogi Madhuprakash
cellarchlab.com
Time for a thread!🧵 How different is the molecular organization of thylakoids in “higher” plants🌱? To find out, we teamed up with @profmattjohnson.bsky.social to dive into spinach chloroplasts with #CryoET ❄️🔬. Curious? ..Read on!

#TeamTomo #PlantScience 🧪 🧶🧬 🌾
elifesciences.org/articles/105...
1/🧵
Reposted by Jogi Madhuprakash
computingcaitie.bsky.social
I am excited to share our new preprint on the CAGE complex, a mysterious hollow protein complex that I first saw years ago while surveying Tetrahymena ciliary lysate www.biorxiv.org/content/10.1... #cilia #protistsonsky 🧬🧪
Reposted by Jogi Madhuprakash
olibclarke.bsky.social
Was lucky to see this presented at the NYC cryoEM meeting earlier this year - super cool stuff!
Reposted by Jogi Madhuprakash
Reposted by Jogi Madhuprakash
jmadhuprakash.bsky.social
And a special shout-out to @kamounlab.bsky.social for his unwavering support on this journey exploring AVRcap1b from Phytophthora infestans – the infamous Irish potato famine pathogen. 🥔🦠
10/10
jmadhuprakash.bsky.social
Huge thanks to Ben and all our fantastic co-authors (‪@adelineharant.bsky.social @mpcontreras.bsky.social @Liang-Yu Hou @Chih-Hang Wu ‪@kamounlab.bsky.social‬) who made this story possible.
Here’s that amazing movie by Ben again!
9/10
jmadhuprakash.bsky.social
Our model: Once activated, dissociated NRC protomers assemble in a stepwise manner to form a full hexameric resistosome. AVRcap1b blocks this process, capturing NRC assembly intermediates and relocating them via the TOL-ESCRT pathway.
Effector biology rocks! #EffectorWisdom
8/10
jmadhuprakash.bsky.social
Remember TOL? How does it bind to AVRcap1b compared to SlNRC3? Turns out, they bind to opposite interfaces on AVRcap1b! This supports a dual-targeting mechanism, with the effector linking ‘immune suppression’ to ‘membrane trafficking’
🧊 SlNRC3–AVRcap1b (cryoEM)
🧬 AVRcap1b–TOL (PDB:9RDC)
7/10
jmadhuprakash.bsky.social
It turns out we could use AVRcap1b as a molecular trap to capture other NRC assembly intermediates. One AVRcap1b truncation captured an SlNRC3 assembly intermediate with four protomers.
Cool! NRC resistosomes assemble in a stepwise process!
6/10
jmadhuprakash.bsky.social
Through its L-shaped structure, AVRcap1b sterically blocks the SlNRC3 resistosome by forming contacts with three protomers (half the hexameric resistosome)!
5/10
jmadhuprakash.bsky.social
What’s this intriguing complex? Together with Ben, we purified the AVRcap1b-SlNRC3 complex from our favourite plant—the Aussie wonder Nicotiana benthamiana aka benthi—and resolved this beautiful cryo-EM structure and see how AVRcap1b wraps around three SlNRC3 protomers!
4/10
jmadhuprakash.bsky.social
What sort of complex does AVRcap1b form with activated NRCs? Blue Native-PAGE assays revealed an intermediate complex. Instead of the expected NRC hexamer, we saw an intriguing smaller band that contains both tomato NRC3 and Phytophthora AVRcap1b 🤔
3/10
jmadhuprakash.bsky.social
It turned out AVRcap1b associates only with the activated NRCs, but not their resting state. Check this super co-IP experiment from our previous paper:
bsky.app/profile/kamo...
2/10
kamounlab.bsky.social
A co-IP masterclass. Courtesy of Madhu
@jmadhuprakash.bsky.social
mpcontreras.bsky.social
Here’s the major plot twist… AVRcap1b does not interact with resting-state NRCs but interacts specifically with the active form! It binds NRCs through a surface distinct from the NbTOL9a interface, suggesting it bridges these pathways to “block” immune signaling.
12/15
jmadhuprakash.bsky.social
We’re building on the recent structure of L-shaped AVRcap1b effector in complex with a host TOL9 protein. This effector bridges TOL9 and NRC helpers to suppress immunity 👇
bsky.app/profile/mpco...
2/10
mpcontreras.bsky.social
Thrilled to share our latest preprint! This work started during my PhD and was finished together with @jmadhuprakash.bsky.social. We found a Phytophthora infestans L-shaped effector that bridges a host TOL protein to activated NLRs to suppress immunity!
www.biorxiv.org/content/10.1...
1/15
jmadhuprakash.bsky.social
🚨 New @biorxivpreprint alert! 🚨
We are thrilled to share our latest findings—building on our earlier work on suppressors of helper NLRs of the NRC family—a Phytophthora infestans L-shaped effector captures resistosome assembly intermediates of tomato NRC3!
www.biorxiv.org/content/10.1...
1/10
Reposted by Jogi Madhuprakash
kamounlab.bsky.social
A co-IP masterclass. Courtesy of Madhu
@jmadhuprakash.bsky.social
mpcontreras.bsky.social
Here’s the major plot twist… AVRcap1b does not interact with resting-state NRCs but interacts specifically with the active form! It binds NRCs through a surface distinct from the NbTOL9a interface, suggesting it bridges these pathways to “block” immune signaling.
12/15
Reposted by Jogi Madhuprakash
biorxiv-plants.bsky.social
A plant pathogen effector blocks stepwise assembly of a helper NLR resistosome https://www.biorxiv.org/content/10.1101/2025.07.14.664264v1