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Johann Confais

@johannconfais.bsky.social

690 followers 710 following 10 posts

Bioinformatics @urgi-inrae.bsky.social Interested in #Genomics, #Evolution, #Transposons, Repeat annotation, #Pangenomic, #KnowledgeGraph https://eng-urgi.versailles-grignon.hub.inrae.fr/about-us/team/johann-confais join the TEhub : @tehub.bsky.social

eng-urgi.versailles-grignon.hub.inrae.fr

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Johann Confais @johannconfais.bsky.social · 14d

🚨 📢 PhD offer in a nice place with nice people.

Rita Rebollo @ritarebollo.bsky.social · 22d

Hi! We are looking for a PhD to work on the cross talk between transposable elements, insects and intracellular bacteria on the bioinformatics side. The PhD would be supervised by @mariefablet.bsky.social and myself along with @nicolasparisot.bsky.social Deadline December 2025! Please share! #tesky

Johann Confais @johannconfais.bsky.social · 14d

Congrats Rita !

Reposted by Johann Confais

Cornille “Eclectic” Lab @cornilleamand.bsky.social · Aug 18

JOIN US WEDNESDAY, Aug. 20, 2025, @eseb2025.bsky.social ! 🚪 Room 120–121 🕑 2:00–5:40 PM
🔥 Satellite Symposium 🔥 “Ecological Genomics of Coevolution”
Keynote speakers:
⭐ Ellen Leffer
⭐Joy Bergekson @bergelsonlab.bsky.social
💡 Young Researcher Talks on host–pathogen dynamics, symbiosis, adaptation!

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Reposted by Johann Confais

Mariène Wan @marienewan.bsky.social · Jul 10

Venez découvrir #REPET, un outil de détection, de classification et d'annotation d'éléments transposables en live avec Etienne Bardet en amphi E @jobim2025.bsky.social

@urgi-inrae.bsky.social

#JOBIM2025 #URGI #INRAE

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Reposted by Johann Confais

Mariène Wan @marienewan.bsky.social · Jul 10

Venez me voir au poster 2, pour découvrir l'URGI, une plateforme bio-informatique @urgi-inrae.bsky.social
@jobim2025.bsky.social
#JOBIM2025 #URGI #INRAE

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Johann Confais @johannconfais.bsky.social · Jul 10

Vous êtes à #JOBIM2025 et vous avez manquez le poster de @marienewan.bsky.social sur la nouvelle version de #REPET ? Rassurez vous une demo est organisé aujourd'hui à midi en amphi E. Vous découvrirez toutes les évolutions mises en place pour vous faciliter l'annotation des #transposons

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Reposted by Johann Confais

BioinfOmics INRAE @bioinfomics.bsky.social · May 20

Notre plateforme de Jouy recrute pour contribuer au développement de Siduri, l'entrepôt de données de Ferments du Futur !

INRAE Migale @inrae-migale.bsky.social · May 20

Un poste de contractuel (jusqu'à 7 ans possible) en développement de système d'information est ouvert au sein de notre équipe, dans le cadre du Grand Défi Ferments du Futur.
📅Candidature jusqu'au 20/06
Plus d'infos sur jobs.inrae.fr/ot-25893

Ingénieur-e en développement de systèmes d’information

Votre mission, les objectifs qui vous serons fixés et les activités qui en découlent s’inscrivent principalement dans le cadre du projet Grand Défi Ferments du Futur, dont la durée prévisionnelle est ...

jobs.inrae.fr

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Reposted by Johann Confais

Unité INRAE MaIAGE @inrae-maiage.bsky.social · May 6

Trainings of the “Cycle bioinformatique par la pratique” 2025

Tidyverse : documents.migale.inrae.fr/posts/traini...

Python : documents.migale.inrae.fr/posts/traini...

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Johann Confais @johannconfais.bsky.social · Apr 30

Congratulations !

Reposted by Johann Confais

Dfam Database of Transposable Elements @dfam.bsky.social · Mar 10

Today we released Dfam 3.9 with many new community submissions and the result of a thorough curation and update of the Drosophila Melanogaster library. www.dfam.org (release notes: www.dfam.org/releases/Dfa...)

Dfam

Open database of transposable elements and repetitive DNA families

www.dfam.org

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Reposted by Johann Confais

bioRxiv Bioinfo @biorxiv-bioinfo.bsky.social · Mar 3

GrAnnoT, a tool for effecient and reliable annotation transfer through pangenome graph https://www.biorxiv.org/content/10.1101/2025.02.26.640337v1

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Johann Confais @johannconfais.bsky.social · Feb 21

A great opportunity in a nice place 👇

URGI @urgi-inrae.bsky.social · Feb 21

🚨📢 We are hiring a postdoc position at URGI in bioinformatics genomics. All details are available here urgi.versailles.inrae.fr/About-us/New...

Postdoc position - URGI

Content Management System

urgi.versailles.inrae.fr

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Reposted by Johann Confais

INRAE Migale @inrae-migale.bsky.social · Feb 13

Besoin de vous former à #Python ? Notre cycle de formation "Bioinformatique par la pratique" propose ce module introductif à Jouy-en-Josas sur 2 jours (31 mars, 1er avril).
📝 Inscriptions et programme sur documents.migale.inrae.fr/trainings.html

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Reposted by Johann Confais

Rita Rebollo @ritarebollo.bsky.social · Jan 31

A couple of months ago I tried the @peercommunityin.bsky.social publishing system & I can only recommend it (pun intended). Please see below to change how we publish science 1/n

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Reposted by Johann Confais

Cecile Lorrain @ccilelorrain.bsky.social · Jan 14

Dive into the massive genomes of plant pathogenic rust fungi! 🌿🍄
Our study reveals how ancestral & recent bursts of transposition have shaped these remarkable genomes.
👏 Congrats to @Emma______C on her 1st PhD paper!
🙌 @SebbyRust, Emmanuelle Morin

www.biorxiv.org/content/10.1...

www.biorxiv.org

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Reposted by Johann Confais

Clément Goubert @clementgoubert.bsky.social · Jan 14

The great @johannconfais.bsky.social on a reference-free approach (panREPET) to annotate #Transposons in #pangenomes 🧬

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Reposted by Johann Confais

URGI @urgi-inrae.bsky.social · Jan 14

Great presentation from @johannconfais.bsky.social at #PAG2025 #PAG32 on the first result obtained with panREPET tool a non reference centric approach

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Johann Confais @johannconfais.bsky.social · Jan 13

REPET got a complete overhaul in version 4.0 ! Etienne Bardet from @urgi-inrae.bsky.social presents the updates in #PAG32
forgemia.inra.fr/urgi-anagen/...

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Johann Confais @johannconfais.bsky.social · Jan 13

Great tall from @clementgoubert.bsky.social to present GraffiTE: a pipline that finds polymorphic TE in genomes
#PAG32
github.com/cgroza/Graff...

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Reposted by Johann Confais

Nicolas Francillonne @nico971.bsky.social · Jan 12

@johannconfais.bsky.social and @clementgoubert.bsky.social are presenting @tehub.bsky.social at #PAG2025, an amazing resource and driven community for anyone interested in transposable element

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Reposted by Johann Confais

Clément Goubert @clementgoubert.bsky.social · Jan 10

#PAG32 I'd bet that every genome studied at PAG has a least 1 #Transposon, if not thousands! Find us on Sunday for an exciting session on #mobileDNA!

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Reposted by Johann Confais

URGI @urgi-inrae.bsky.social · Jan 12

Great presentation from Michael Alaux in #BrAPI session #PAG2025, how the french community use BrAPI to share data between several tools

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Johann Confais @johannconfais.bsky.social · Jan 11

Amazing talk of @nico971.bsky.social from @urgi-inrae.bsky.social on RepetDB #PAG32

urgi.versailles.inra.fr/repetdb/begi...

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Reposted by Johann Confais

Didier Mazel @amazeld.bsky.social · Dec 8

We are opening a call for applications 2025 – Creation of new junior research groups at the Institut Pasteur in Paris @pasteur.fr all details on our web site : research.pasteur.fr/en/call/call...

Call for applications 2025 – Creation of new research groups at the Institut Pasteur | Research - Institut Pasteur

research.pasteur.fr

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Reposted by Johann Confais

Tony Heitkam🌱🔍💚 @toheitka.bsky.social · Nov 10

Scraping who is on the platform working on #TransposableElements or other types of #RepetitiveDNA

Have fun!

go.bsky.app/7t5GQAP

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