Oleg
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oleg-phd.bsky.social
Oleg
@oleg-phd.bsky.social
Computational Structural Biologist @cryocloudio.bsky.social
Reposted by Oleg
I wrote a blog post about the future of structural bioinformatics.

Where to go after AlphaFold? How do we avoid the field becoming a load of half-baked LLMs?

Let me know what you think.

jgreener64.github.io/posts/struct...
Where next for structural bioinformatics?
jgreener64.github.io
October 15, 2025 at 2:16 PM
I explored diffuse scattering and molecular dynamics during my doctoral studies, but unfortunately, I wasn’t able to find any meaningful interpretation at the time. Very curious to see what insights this initiative will bring!
What’s the next PDB? Maybe it’s …the PDB.

We just launched @diffuseproject.bsky.social a structural biology initiative exploring protein motion & rethinking how we generate and use experimental data. Quick 🧵👇

www.diffuse.science
The Diffuse Project
The Diffuse Project
www.diffuse.science
August 16, 2025 at 1:31 PM
Reposted by Oleg
Job alert 🚨 Our team is looking for ML Research Scientist to join Johnson&Johnson research. We work on geometric deep learning and LLMs in drug discovery. 🧬🤓 Drop me a message if you’re interested, or share this if you know someone who’s a great fit!

Multiple locations available.
August 14, 2025 at 4:29 PM
Reposted by Oleg
None of this is real and it doesn't matter
mailchi.mp
August 7, 2025 at 2:12 PM
Reposted by Oleg
Join Martin’s new lab, great location, super cool project, and the best advisor! What’s not to like?
I am looking to interview prospective PhD students, Postdocs and technicians, particularly with wetlab expertise, but computational skills are a bonus.
July 25, 2025 at 11:06 AM
Reposted by Oleg
🌟 Employee Spotlight: Oleg Mikhailovskii

Oleg is a Computational Structural Biologist with expertise in biophysics, MD, and data science.

At CryoCloud, he designs algorithms for #cryoEM & #XRC, building high‑throughput methods that boost speed and scalability in the cloud 🚀

@oleg-phd.bsky.social
July 24, 2025 at 8:58 AM
Just like the video creator, I had no idea these kinds of plots were a thing. Although, I play a bunch of instruments and have a decent grasp of music theory🫣

www.youtube.com/watch?v=tCsl...
The Physics Of Dissonance
YouTube video by minutephysics
www.youtube.com
July 20, 2025 at 1:36 PM
Reposted by Oleg
Sam Altman wrote a blog post to tell us that he doesn't understand human creativity, technology, science, politics, history, ethics, or even his own AI. He does, however, have some grasp of marketing.
blog.samaltman.com/the-gentle-s...
The Gentle Singularity
We are past the event horizon; the takeoff has started. Humanity is close to building digital superintelligence, and at least so far it’s much less weird than it seems like it should be. Robots...
blog.samaltman.com
June 11, 2025 at 6:32 AM
Reposted by Oleg
Europeans who think Europe will save world science from Trump are fooling themselves by an order of magnitude.
June 10, 2025 at 11:31 PM
Reposted by Oleg
We are so excited to see where these models and data go next!

📝Paper: biorxiv.org/content/10.1...
👩‍💻Repo: github.com/WaymentSteel...
👾Colab: colab.research.google.com/github/Wayme...

Huge congrats to the co-authors @hkws.bsky.social, @ramith.fyi, Hasindu, @sokrypton.org, and doro!
biorxiv.org
March 20, 2025 at 7:13 PM
A non-political reason to drive something else than Tesla that buys into old school cartoon tricks
www.youtube.com/watch?v=IQJL...
Can You Fool A Self Driving Car?
YouTube video by Mark Rober
www.youtube.com
March 16, 2025 at 9:14 AM
Reposted by Oleg
Hats off to all our american colleagues out there protesting in the streets today, scientific progress is the only way to a better future and no government should stand in the way of that ✊🏼
March 7, 2025 at 7:29 PM
It’s sad to see what trump does to science but it’s even worse to see two psychopaths with no empathy bully the unfortunately emotional president of the country at war. This opinion by Mikhail Zygar is spot on (free 10-min audio version avail.). Is this the new reality, or Americans could fix that?
The Putinization of America: Can Trump and Musk Outdo Vladimir Putin?
In Moscow, there’s plenty of speculation that Musk could quickly become to Trump what Boris Berezovsky was to Putin. Two alpha males, many argue, cannot coexist in the same den.
www.vanityfair.com
March 1, 2025 at 5:40 AM
Reposted by Oleg
Not sure why Silicon Valley is so fixated on marketing AI to scientists as a tool for hypothesis generation? We have no problems generating hypotheses. We can crank out half-baked ideas just fine. You can help by pipetting, debugging unmaintained code, and troubleshooting weird unreported edge cases
February 19, 2025 at 6:32 PM
Reposted by Oleg
Finally put together a script that scrapes arxiv/biorxiv/pubmed and emails the relevant structbio/ml papers from there every morning github.com/delalamo/Pub... I have it running on Heroku cloud for $7/mo, but it can also run locally for free on a raspberry pi or whatever
February 4, 2025 at 5:48 PM
Reposted by Oleg
In the cover story of the February issue of @sciam.bsky.social I explain what biomolecular condensates are and why they are transforming cell biology. A short 🧵
(You'll need a subscription to read the article.)
www.scientificamerican.com/article/myst...
Mysterious Blobs in Cells Are Changing the Way We Understand Life
Tiny specks called biomolecular condensates are leading to a new understanding of the cell
www.scientificamerican.com
January 21, 2025 at 5:43 PM