Tri Kaloudis
@trikaloudis.bsky.social
670 followers 830 following 63 posts
Water quality/organic pollutants/aquatic metabolomics. Save water, drink beer. My own views here. He/him. www.aquomixlab.com @CYANOCOST @WaterTopCost. #teammassspec
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Reposted by Tri Kaloudis
aquomixlab.bsky.social
Last week we had the pleasure to host Constantina Varnava, PhD candidate of Iro Tsipa's group at the University of #Cyprus. We had fun analyzing MS datasets for #microbial #metabolites.
trikaloudis.bsky.social
The #IFHAB Workshop 16-17 October at Hamilton #Ontario. #Freshwater #HABs. Still time to register. www.ifhabworkshop.com
Reposted by Tri Kaloudis
mmzdouc.bsky.social
Aaand it's out! Meet MITE - the natural product tailoring enzyme database, just published in @narjournal.bsky.social! MITE DB captures the substrate- and reaction-specificity of tailoring enzymes, allowing to capture this information in a human- and machine-readable way! doi.org/10.1093/nar/...
trikaloudis.bsky.social
🧪📣 Save the date for SETAC Europe 2016 @setac.bsky.social #SETACMaastricht !
Our Session title: "Integrating #Genomics, #Metabolomics, and Control Strategies to Address Harmful Algal and #Cyanobacterial Blooms", Chaired by Petra Visser, Dail Laughinghouse, @anastasiahiskia.bsky.social.
Reposted by Tri Kaloudis
mmzdouc.bsky.social
Next at VAAM Workshop at @freieuniversitaet.bsky.social , Alexandra Eckart from HIPS talking about her discoveries of tenacious bacteria isolated from Hydractinia echinata hydroids.
Reposted by Tri Kaloudis
pastelbio.bsky.social
MassVision: An Open-Source End-to-End Platform for AI-Driven Mass Spectrometry Imaging Analysis pubs.acs.org/doi/10....

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#proteomics #prot-paper
Reposted by Tri Kaloudis
daniel-petras.bsky.social
In a large community effort with 50 coauthors, we analyzed the same set of marine dissolved organic matter samples across 24 laboratories via non-targeted LC-MS/MS, to check if we get comparable data.
If you want to check it out, you can find our preprint here:
doi.org/10.26434/che...
Reposted by Tri Kaloudis
mmzdouc.bsky.social
If you are interested, make sure to apply! I have been working with Marnix, Justin, and Daniel over the last few years and they are awesome!
marnixmedema.bsky.social
We are looking for a 3-year postdoc to work with Daniel Probst, Justin van der Hooft and myself on an exciting project involving federated learning and integrative omics for discovery of new antibiotics from natural products.
Apply here: www.wur.nl/en/vacancy/p...
Please share!
www.wur.nl
Reposted by Tri Kaloudis
ometa-labs.bsky.social
MASST searches billions of spectra in seconds, answering the question, "Where have I seen this molecule before?" in the same time it takes to ask it. Custom MASST databases tailor searches to your research questions.

Want to try it out? Check out our new tutorial: www.youtube.com/watch?v=9mga....
Tutorial: Building Custom MASST Databases
YouTube video by Ometa Labs
www.youtube.com
Reposted by Tri Kaloudis
kkmurray.bsky.social
(ACS Anal Chem) [ASAP] Increasing the Scale of the Mass Spectrometry Query Language Compendium with Explainable AI: Analytical ChemistryDOI: 10.1021/acs.analchem.5c02591 #MassSpecRSS #ACSAChem
[ASAP] Increasing the Scale of the Mass Spectrometry Query Language Compendium with Explainable AI
Analytical ChemistryDOI: 10.1021/acs.analchem.5c02591
dlvr.it
Reposted by Tri Kaloudis
itaiyanai.bsky.social
Have you heard about the Night Science Podcast, where we talk about the actual creative process of doing science? We explore this with discussions with brilliant scientists & also philosophers and artists, to figure out the tricks of the creative scientific trade.
podcasts.apple.com/us/podcast/n...
Reposted by Tri Kaloudis
mmzdouc.bsky.social
Into natural product biosynthesis & tailoring enzymes? Frustrated by the lack of a dedicated resource to explore their functions? Tired of endless literature searches for reaction info? Meet the MITE database, freely available at mite.bioinformatics.nl. Preprint: doi.org/10.26434/che... (1/8)
Reposted by Tri Kaloudis
hudrewthis.bsky.social
Please share widely. Let's counteract the dismantling of public trust in science and research infrastructure with creativity and community.

Apply here by 9/5. Link also in bio.
bit.ly/comicscollabfall2025
Reposted by Tri Kaloudis
hudrewthis.bsky.social
If you have previously applied and have not worked with a student yet, first off, thank you for your continued interest. You are welcome to email me and I'll copy over your previous application material.
trikaloudis.bsky.social
Great work by @helenamrusso.bsky.social and Wilhan Nunes on the CMMC @microbialcmmc.bsky.social analysis dashboard in @gnps2.bsky.social . It is very exciting to explore results in new ways ! #teammassspec
Reposted by Tri Kaloudis
drchrispook.bsky.social
Fascinating tale of pharmaceutical peptide vulnerability. Revealed through the awesome power of LC-MS.
#MassSpec
#LC
#LCMS
jkmcbee.bsky.social
Here’s an interesting story for #teammassspec. Liraglutide went generic in December 2024 and we have been developing methods for impurity characterization but we kept seeing an unusual modification with a +12 Da shift. A little digging revealed that others had noticed that the n-terminal histidine..
Reposted by Tri Kaloudis
realbiomassspec.bsky.social
In-Situ Reaction Monitoring and Mechanistic Studies by Mass Spectrometry: Heterogeneous Photocatalysis and Initial Contact Reaction #AC pubs.acs.org/doi/10.1021/...
In-Situ Reaction Monitoring and Mechanistic Studies by Mass Spectrometry: Heterogeneous Photocatalysis and Initial Contact Reaction
Elucidating reaction mechanisms in heterogeneous catalysis demands real-time tracking of transient species at the solid–liquid interface. To address limitations in directly probing surface processes with conventional mass spectrometry (MS), this work develops an innovative “in-source reaction” strategy by integrating the reactor with the electrospray ionization (ESI) source. Diverse catalysts (e.g., g-C3N4, TiO2, zeolites, and Pd/C) were robustly immobilized within a glass probe (GP), integrating the microreactor and ionization source. This enables direct, subsecond resolution detection of species desorbing from catalytic surfaces. This strategy has been successfully verified by in-situ tracking of the photocatalytic degradation of Brilliant Green (BG) and other dyes. Over 40 intermediates in BG photocatalytic degradation were detected, with different evolution pathways revealing distinct mechanisms for g-C3N4 under visible light and TiO2 under UV light. Besides photocatalyst, typical solid catalysts were also immobilized on the inner wall of the GP to study the initial contact reactions of a β-O-4 model compound of lignin conversion. The obvious dehydrogenation of surface-adsorbed GGGE on Pd surface was observed by in-situ monitoring, while basic or amphoteric support surface spontaneously induced cyclization of GGGE, even without the input of external energy such as light and heat. This method provides a novel, extremely feasible, and sensitive strategy for tracking surface processes in liquid–solid heterogeneous catalytic reactions and holds promise for broader application to diverse catalytic reaction systems in the future.
pubs.acs.org
Reposted by Tri Kaloudis
davidbroadhurst.bsky.social
Version 2.1 of the QC:MXP repeat-injection derived batch correction app is now available to download at qcmxp.org.
I thought it would be fun to revisit an old data set from Craig Wheelock's lab - doi.org/10.1183/1399....
16 batch, 880 subjects, 224 pooled QC injections, 100+ curated metabolites.
Reposted by Tri Kaloudis
metabomichael.bsky.social
Let there be METABOlites...in Munich!

We are happy that, in collaboration with Bruker Daltonics, our lab at @www.helmholtz-munich.de welcomed the first ever installation of a timsMetabo outside of Bruker HQ!