Xabier Vázquez-Campos
@xabivc.bsky.social
160 followers 260 following 38 posts
Nearly-dry wet-lab microbiologist 😅 Biologist, (env.) microbiologist, bioinformatician. First gen.
Posts Media Videos Starter Packs
Reposted by Xabier Vázquez-Campos
isme-microbes.bsky.social
ISME Communications is expanding its scope to include Taxonomy and Nomenclature, recognizing their essential role in microbial ecology.
Read more: isme-microbes.org/taxonomy-and...
#microbes #taxonomy
Reposted by Xabier Vázquez-Campos
jcamthrash.bsky.social
Metal speciation and bioavailability in microbial growth media www.biorxiv.org/content/10.1... #jcampubs
xabivc.bsky.social
DFAST (sorta PGAP fromthe DDBJ)
Not overly complicated to add custom annotation sources (blastn, blastp, rps-blast, hmm-based...)
Reposted by Xabier Vázquez-Campos
imili-micro.bsky.social
Welcome to the social media account of the International Microbiology Literacy Initiative (IMiLI). Nearly 1,000 researchers freely contribute to the IMiLI project integrating microbiology into education providing downloadable resources for all. Explore at imili.org
Reposted by Xabier Vázquez-Campos
stephenturner.us
Apple is entering the protein folding arena.
SimpleFold: Folding Proteins is Simpler than You Think arxiv.org/abs/2509.18480 🧬🖥️🧪 github.com/apple/ml-sim...
Reposted by Xabier Vázquez-Campos
jcamthrash.bsky.social
Interested in removing particle-associated microbes from particles for eg flow cytometry, culturing, or other single-cell microbiology purposes? Led by graduating PhD stdnt Jordan Coelho:

Detergent-based separation of microbes from marine particles journals.asm.org/doi/10.1128/... #jcampubs 🌊
Reposted by Xabier Vázquez-Campos
merenbey.bsky.social
Have you ever looked at some differentially occurring gene clusters in a microbial #pangenome and thought to yourself "I wonder if they contribute to any metabolic modules"?

With the most recent changes, the answer is a few clicks away in #anvio 😇
Reposted by Xabier Vázquez-Campos
obialik.bsky.social
We can't have innovation if we block out those with new ideas or who challenge old ones. Reviewers can challenge without being assholes, and we need to acknowledge such behaviors exist and need to be expunged. 🧪
emmadnn.bsky.social
It was great to chat with @katarinazimmer.bsky.social for her important article on discrimination and microagressions in peer review.

Without system-wide changes, we must rely on individual action - if you experience this behaviour, inform the editorial team ✏️

www.nature.com/articles/d41...
‘Lipstick on a pig’: how to fight back against a peer-review bully
Scientific societies, journals, editors and researchers are pushing back against mean-spirited peer reviews.
www.nature.com
Reposted by Xabier Vázquez-Campos
xtream-project.eu
Vietnam reveals a hidden treasure: 12 new species of acid-loving fungi and the rediscovery of Acontium velatum 🍄. Out of the 100 samples studied, most thrive at pH <1, heat & organic solvents —showing big biotech potential. Read the full study👉
Extremely acidophilic filamentous fungi are more prevalent in diverse ecosystems than previously documented - Scientific Reports
Scientific Reports - Extremely acidophilic filamentous fungi are more prevalent in diverse ecosystems than previously documented
doi.org
Reposted by Xabier Vázquez-Campos
bejalab.bsky.social
EcoFoldDB: Protein Structure-Guided Functional Profiling of Ecologically Relevant Microbial Traits at the Metagenome Scale enviromicro-journals.onlinelibrary.wiley.com/doi/10.1111/...
Reposted by Xabier Vázquez-Campos
Reposted by Xabier Vázquez-Campos
annizlab.bsky.social
X-Mapper 🦠🧬🧪 - a sequence aligner developed for microbes, now on Bioconda! 🚀
• 11–24× fewer suboptimal alignments (same for human genome)
• 3–579× lower inconsistency
• improves on ~30% of reads aligned to non-target species
github.com/mathjeff/map...
bioconda.github.io/recipes/x-ma...
#microsky
Alignment algorithms represent a balance between speed and accuracy. We evaluated this balance across aligners, with accuracy measured by suboptimal alignments. We found that the relationship between alignment time (with 30 threads) and suboptimal alignment rates exhibits diminishing returns, where X-Mapper stands out as an outlier, offering the highest accuracy with competitive speed.
Reposted by Xabier Vázquez-Campos
jcamthrash.bsky.social
Aquatic fungal diversity assessment through metagenomics is still limited to current databases aslopubs.onlinelibrary.wiley.com/doi/10.1002/... #jcampubs
Reposted by Xabier Vázquez-Campos
evgenii-protasov.bsky.social
A deep-sea hydrothermal vent worm detoxifies arsenic and sulfur by intracellular biomineralization of orpiment (As2S3)
#microbiology #DeepSea
@plosbiology.org
journals.plos.org/plosbiology/...
Reposted by Xabier Vázquez-Campos
Reposted by Xabier Vázquez-Campos
jorg-vogel-lab.bsky.social
Looking for a new approach to studying or eliminating phages? Check out our study introducing anti-phage ASOs (antisense oligos) out in @Nature today. nature.com/articles/s4158…