#transcriptomic,
scCellFie is a computational framework that infers metabolic activities from both single-cell and spatial transcriptomic data, enabling large-scale, interpretable analyses across cell atlases.
November 10, 2025 at 3:16 PM
Integrated Cross-Organ Transcriptomic Analysis Uncovers Conserved Gene Signatures Predictive of Allograft Rejection https://www.biorxiv.org/content/10.1101/2025.11.07.687316v1
November 10, 2025 at 4:08 AM
Integrated Cross-Organ Transcriptomic Analysis Uncovers Conserved Gene Signatures Predictive of Allograft Rejection https://www.biorxiv.org/content/10.1101/2025.11.07.687316v1
November 10, 2025 at 4:08 AM
Integrated immune, hormonal, and transcriptomic profiling reveals sex-specific dysregulation in long COVID patients with ME/CFS - Shahbaz et al.

"Hormonal analysis shows reduced testosterone in [females] and estradiol in [males]."

www.s4me.info/threads/inte...

www.cell.com/cell-reports...
Integrated immune, hormonal, and transcriptomic profiling reveals sex-specific dysregulation in long COVID patients with ME/CFS, 2025, Shahbaz et al.
https://www.cell.com/cell-reports-medicine/fulltext/S2666-3791(25)00522-1 Highlights • Female long COVID (LC) patients show heightened immune activation and inflammation • Disrupted sex hormone lev...
www.s4me.info
November 10, 2025 at 3:15 AM
3/
Integrated immune, hormonal, and transcriptomic profiling reveals sex-specific dysregulation in long COVID patients with ME/CFS

www.cell.com/cell-reports...

Screenshot from latest Science for ME weekly update

#LongCovid #MEcfs
November 10, 2025 at 1:26 AM
Transcriptomic profiling revealed significant gene expression changes, particularly for the 18-demethylated analog, suggesting modulation of key signaling pathways.
November 9, 2025 at 2:16 PM
Transcriptomic Profiling of scWAT Reveals Reduced Lipid-Associated Macrophage Signatures in Long-Term Endurance- and Resistance-Trained Athletes https://www.biorxiv.org/content/10.1101/2025.11.07.687158v1
November 9, 2025 at 5:02 AM
Transcriptomic Profiling of scWAT Reveals Reduced Lipid-Associated Macrophage Signatures in Long-Term Endurance- and Resistance-Trained Athletes https://www.biorxiv.org/content/10.1101/2025.11.07.687158v1
November 9, 2025 at 5:02 AM
Nature research paper: Transcriptomic and spatial organization of telencephalic GABAergic neurons

go.nature.com/43fLcE5
Transcriptomic and spatial organization of telencephalic GABAergic neurons - Nature
Long-distance migration and dispersion is a common characteristic of nearly all classes of telencephalic GABAergic neurons, which diversify extensively after birth in the cortex and striatum, but show limited postnatal changes in the septum, preoptic area and pallidum.
go.nature.com
November 8, 2025 at 12:24 PM
1️⃣0️⃣📖 Paper: Shahbaz et al., Cell Reports Medicine (2025)
“Integrated immune, hormonal, and transcriptomic profiling reveals sex-specific dysregulation in Long Covid patients with ME/CFS.”
www.cell.com/cell-reports...
Integrated immune, hormonal, and transcriptomic profiling reveals sex-specific dysregulation in long COVID patients with ME/CFS
Shahbaz et al. find that female long COVID patients with ME/CFS exhibit heightened inflammation, altered hematopoiesis, disrupted hormone levels, and neuroinflammatory gene signatures. In parallel, ou...
www.cell.com
November 8, 2025 at 11:47 AM
Transcriptomic and proteomic analyses revealed gene and protein networks associated with these pathological changes. Further, RECK depletion led to elevated levels of inflammatory markers and enhanced EGFR signaling, suggesting a potential therapeutic target.
November 8, 2025 at 8:46 AM
Sample-multiplexed FACS-preprocessing of PBMCs enables scalable scRNA-seq without compromising transcriptomic or cellular integrity #SingleCell 🧪🧬🖥️
https://www.biorxiv.org/content/10.1101/2025.11.06.687014v1
November 8, 2025 at 8:00 AM
Sample-multiplexed FACS-preprocessing of PBMCs enables scalable scRNA-seq without compromising transcriptomic or cellular integrity https://www.biorxiv.org/content/10.1101/2025.11.06.687014v1
November 8, 2025 at 3:35 AM
Sample-multiplexed FACS-preprocessing of PBMCs enables scalable scRNA-seq without compromising transcriptomic or cellular integrity https://www.biorxiv.org/content/10.1101/2025.11.06.687014v1
November 8, 2025 at 3:35 AM
Immune transcriptomic differences in paediatric patients with SARS-CoV-2 compared to other lower respiratory tract infections https://www.biorxiv.org/content/10.1101/2025.11.07.687132v1
November 8, 2025 at 3:16 AM
Immune transcriptomic differences in paediatric patients with SARS-CoV-2 compared to other lower respiratory tract infections https://www.biorxiv.org/content/10.1101/2025.11.07.687132v1
November 8, 2025 at 3:16 AM
But it's taken me weeks of time to do quality control exercises and confirm mapping quality, using a transcriptomic alignment method featuring bowtie2 as before, but instead of genomic alignment. And there's some stupid issues. Just stupid...
November 8, 2025 at 2:13 AM
Cell Reports Medicine: 'Integrated immune, hormonal, and transcriptomic profiling reveals sex-specific dysregulation in long COVID patients with ME/CFS'

www.cell.com/cell-reports...
Integrated immune, hormonal, and transcriptomic profiling reveals sex-specific dysregulation in long COVID patients with ME/CFS
Shahbaz et al. find that female long COVID patients with ME/CFS exhibit heightened inflammation, altered hematopoiesis, disrupted hormone levels, and neuroinflammatory gene signatures. In parallel, ou...
www.cell.com
November 7, 2025 at 10:33 PM
Peripheral transcriptomic signature of chronic antibody-mediated rejection in kidney transplantation: a dual effect for MMP9 over time https://www.medrxiv.org/content/10.1101/2025.11.06.25339648v1
November 7, 2025 at 10:14 PM
Transcriptomic and functional comparison of cells isolated from healthy and degenerated ovine intervertebral discs https://www.biorxiv.org/content/10.1101/2025.11.06.686904v1
November 7, 2025 at 9:30 PM
Transcriptomic and functional comparison of cells isolated from healthy and degenerated ovine intervertebral discs https://www.biorxiv.org/content/10.1101/2025.11.06.686904v1
November 7, 2025 at 9:30 PM
-Hormonal analysis shows reduced testosterone in LCF and estradiol in LCM. -Transcriptomic data reveal #neuroinflammatory signatures in LCF, potentially explaining cognitive symptoms.
The study also identify biomarkers that distinguish LCF from LCM and correlate with sex-specific clinical symptoms.
November 7, 2025 at 7:08 PM
Direct link to the research mentioned in the post above:

Integrated immune, hormonal, and transcriptomic profiling reveals sex-specific dysregulation in long COVID patients with ME/CFS (Nov 7, 2025)
www.cell.com/cell-reports...

[ FREE PDF available ]
Integrated immune, hormonal, and transcriptomic profiling reveals sex-specific dysregulation in long COVID patients with ME/CFS
Shahbaz et al. find that female long COVID patients with ME/CFS exhibit heightened inflammation, altered hematopoiesis, disrupted hormone levels, and neuroinflammatory gene signatures. In parallel, ou...
www.cell.com
November 7, 2025 at 7:06 PM