Alejandro Brenes
banner
ajbrenes.com
Alejandro Brenes
@ajbrenes.com
PostDoc @walmsley-lab.bsky.social @edinuni-irr.bsky.social @edinburgh-uni.bsky.social

| neutrophils single cell proteomics | road cyclist and aero bike enthusiast 🇨🇷🏴󠁧󠁢󠁳󠁣󠁴󠁿

Creator of the Immunological Proteome Resource @immpres.bsky.social
Pinned
Excited to share our work at @natcomms.nature.com

We used single cell proteomics to define the functional heterogeneity of human neutrophils in glioblastoma, finding pro and anti-tumorigenic effector states invisible to scRNAseq.

SCP will revolutionise immunology, this is just the start
It wasnt like that a few years ago. I think Parks and Recreation and Suits made it too popular.

I used to get it for ~£45-55 and now its like £85+

Also Bowmore 12 is a beauty, good balance and very well priced.
January 3, 2026 at 1:18 AM
Not even that whole site is as established as the weird blog for proteomics 😉
January 1, 2026 at 2:57 PM
Interesting site! Had never seen or heard of that communities page. Have you used it much? I liked the post

Maybe i should do one about the GBM SCP paper
January 1, 2026 at 12:10 AM
Reposted by Alejandro Brenes
Many articles reported using an antibody ... that didn’t even bind the key protein in Laflamme’s testing. Those articles had been cited over 3,000 times.

A key question is:

◼️ 𝐂𝐚𝐧 𝐩𝐫𝐨𝐭𝐞𝐢𝐧 𝐛𝐢𝐧𝐝𝐞𝐫𝐬 𝐚𝐜𝐡𝐢𝐞𝐯𝐞 𝐡𝐢𝐠𝐡 𝐬𝐩𝐞𝐜𝐢𝐟𝐢𝐜𝐢𝐭𝐲 𝐟𝐨𝐫 𝐞𝐯𝐞𝐫𝐲 𝐞𝐩𝐢𝐭𝐨𝐩𝐞 & 𝐩𝐫𝐨𝐭𝐞𝐨𝐟𝐨𝐫𝐦?
December 30, 2025 at 1:36 PM
Reposted by Alejandro Brenes
Excited to share our newest paper in @emboreports.org! We used proximity-labeling proteomics to examine how different disease mutations in SHP2 alter its interactions and localization. This was a huge undertaking led by former graduate student Anne an Vlimmeren.

link.springer.com/article/10.1...
Proximity-labeling proteomics reveals remodeled interactomes and altered localization of pathogenic SHP2 variants - EMBO Reports
Missense mutations in PTPN11, which encodes the protein tyrosine phosphatase SHP2, are common in several developmental disorders and cancers. While many mutations disrupt auto-inhibition and hyperacti...
link.springer.com
December 22, 2025 at 7:25 PM
Reposted by Alejandro Brenes
Our first mass spectrometry based single cell proteomics dataset is opnely available. Explore protein abundance profiles across all tumour associated neutrophil populations.

And thanks to @wellcometrust.bsky.social we have funding to develop new visualisations and modules for SCP. #immunosky
December 19, 2025 at 7:29 PM
Reposted by Alejandro Brenes
Some very good news for science and education in the UK and EU! 🎉
🧪 #AcademicSky

www.theguardian.com/education/20...
EU’s Erasmus scheme to reopen to UK students for first time since Brexit at cost of £570m
Deal agreed to rejoin exchange programme in 2027, fulfilling Labour election manifesto pledge
www.theguardian.com
December 17, 2025 at 4:12 PM
Reposted by Alejandro Brenes
Great to see Professor Akram on STV last night joining our call for the rollout of a targeted lung cancer screening programme in Scotland to diagnose the disease earlier and improve survival. Currently, 68% of cases in Scotland are diagnosed at a late stage.
IRR Group Leader Prof Ahsan Akram, appeared on STV last night to call for the rollout of lung cancer screening in Scotland. Early diagnosis saves lives - Scotland has no national lung cancer screening programme, in contrast to England, which has already screened 1M+ people.

edin.ac/4qebkIr
December 17, 2025 at 5:01 PM
Reposted by Alejandro Brenes
Our work using single cell proteomic to define neutrophil functional states in human glioblastoma is out in @natcomms.nature.com

Thanks to all authors, collaborators, editors and reviewers. It id exciting to see the potential SCP has to map neutrophil biology.
Single cell proteomic analysis defines discrete neutrophil functional states in human glioblastoma - Nature Communications
Neutrophils infiltrate glioblastomas with the capacity to engage pro/anti tumoural responses. Here the authors developed proteomic workflows to stratify neutrophil heterogeneity by function. This work...
www.nature.com
December 16, 2025 at 5:56 PM
Reposted by Alejandro Brenes
New study (Walmsley lab) has for the first time, found the set of proteins neutrophils express within a tumour at high detail. This tech has opened the door to understanding neutrophil roles in brain tumours such as glioblastoma but also more generally in health and disease states.

edin.ac/48JhnPq
December 16, 2025 at 3:29 PM
Also excited to see the work featured in the editor highlights 🙂

www.nature.com/collections/...
Structural biology, biochemistry and biophysics
On this page, we highlight some of our most exciting recently published articles in the areas of biochemistry, biophysics, mass spectrometry and structural ...
www.nature.com
December 16, 2025 at 5:49 PM
Only thing I'd say is that this is not likely to have widespread uptake
December 16, 2025 at 9:23 AM
"without compromising quantitative robustness"

With MS2 based TMT???
December 16, 2025 at 9:16 AM
Thanks Luke! It's really nice to see it out 🙂
December 15, 2025 at 8:50 PM
Excited to share our work at @natcomms.nature.com

We used single cell proteomics to define the functional heterogeneity of human neutrophils in glioblastoma, finding pro and anti-tumorigenic effector states invisible to scRNAseq.

SCP will revolutionise immunology, this is just the start
December 15, 2025 at 8:09 PM
You guys are on fire this month 😀
December 6, 2025 at 4:03 PM
Seems thats just a representative image and a good bit of that kit is already there or from.other pots, which makes more sense
December 5, 2025 at 2:16 PM
$1.8 million aus, for a cellenOne, Tecan Fluent, evosep One and an Astral Zoom? 😮
Australia’s 1st Single Cell Cancer Proteomics Lab is coming! Backed by a $1.8m Australian Cancer Research Foundation grant & based at #USYD's Sydney Mass Spectrometry, the national platform will let researchers examine proteins in individual cancer cells, opening new paths to personalised treatment.
December 4, 2025 at 8:13 AM
Reposted by Alejandro Brenes
For context the 'Middle England' referred to here is the 0.5% of households living in homes worth more than £2 million
November 30, 2025 at 10:27 PM
Reposted by Alejandro Brenes
Save the date! 🗓️

The YPIC Annual Proteomics Gathering is returning for the 3rd time and is coming to Madrid in April 2026! 🎉

Seats will be limited to around 100 participants, so stay tuned and be ready to secure your spot! ✨

#APG2026 #YPIC #Proteomics #EuPA
December 1, 2025 at 8:00 AM
Reposted by Alejandro Brenes
Discover iPEX: a breakthrough in spatial proteomics revealing untargeted protein locations at micrometer resolution using tissue expansion and MALDI imaging. PMID:41224995, Nature 2025, @Nature https://doi.org/10.1038/s41586-025-09734-0 #Medsky #Pharmsky #RNA #ASHG #ESHG 🧪
iPEX enables micrometre-resolution deep spatial proteomics via tissue expansion | Nature
The number of spatial omics technologies being developed is increasing1. However, a missing tool is one that can locate proteins in tissues in an untargeted manner at high spatial resolution and coverage. Here we present in situ imaging proteomics via expansion (iPEX), which integrates isotropic tissue magnification2 with matrix-assisted laser desorption/ionization (MALDI) mass spectrometry imaging. iPEX provides scalable spatial resolution down to the micrometre scale and substantially increases the sensitivity of protein identification by 10–100-fold. Using the retina as a model, iPEX enabled the construction of spatial proteomic maps with high precision, the visualization of single-cell layers and extrasomatic structures and the identification of colocalized proteins. iPEX was readily applied to diverse tissues, including brain, intestine, liver and organoids, detecting 600–1,500 proteins at 1–5-µm effective pixel size. The application of iPEX to depict spatial proteomic maps in bra
doi.org
November 30, 2025 at 10:10 AM
Reposted by Alejandro Brenes
Instead of simply empowering disadvantaged scientists, advanced AI models are creating an environment of mistrust where we will rely even more on poor proxies of reputation, favoring established scientists, privileged institutions and entrenching us into the system of tiered scientific journals.
November 27, 2025 at 3:50 PM
Reposted by Alejandro Brenes
Single-cell proteomics is revolutionizing biology by measuring proteins in individual cells in real time. Join Ileana Cristea (@princeton.edu) for this #MolCellProt symposium at #ASBMB26!
www.asbmb.org/annual-meeti...
☑️ Late-breaking abstracts open soon — submit by Jan. 15: l.feathr.co/ESm5YGn8Ps7w.
Scientific symposia
www.asbmb.org
November 25, 2025 at 10:25 PM
Reposted by Alejandro Brenes
New preprint! More landing soon!
November 25, 2025 at 7:34 AM
What a view!
November 22, 2025 at 7:13 PM