Fausto Rodríguez Zapata
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minorallele.bsky.social
Fausto Rodríguez Zapata
@minorallele.bsky.social
Color tierrita. Maize Genetics 🧬 🌽.
Don't let poets lie to you.
Arabidopsis thaliana: cómo una humilde mala hierba se convirtió en una superestrella de la biología | EL ESPECTADOR share.google/EXTccDmir7d3...

Que alegría ver una nota sobre Arabidopsis en el mejor periódico de Colombia.
Cómo una humilde mala hierba se convirtió en una superestrella de la biología
Arabidopsis thaliana no era una candidata para ser el centro de atención. Pero hace 25 años lanzó al mundo botánico a la era molecular.
share.google
November 27, 2025 at 12:44 AM
Reposted by Fausto Rodríguez Zapata
Is everyone ready for #Plantsgiving?!?!

Thank you @martinebotany.bsky.social for my favorite botanical tradition 🥹🌱
November 26, 2025 at 3:20 PM
Reposted by Fausto Rodríguez Zapata
Really fascinating blog post about the plants that Neanderthals cooked and ate (the real "paleo diet" included a lot of grains, pulses, and other plants!).
Coming together to eat the food we share has been part of humanity from the very beginning. I wrote this post after a Thanksgiving week lecture on evidence for Neanderthals and other ancient people making prepared mixtures of grains, lentils, and other foods.

www.johnhawks.net/p/a-neandert...
A Neandertal recipe with lentils and grain
Looking at a fascinating new study that finds mixtures of different plants within ancient morsels of charred foods.
www.johnhawks.net
November 25, 2025 at 7:44 PM
Reposted by Fausto Rodríguez Zapata
Putting on my hat as @asn-amnat.bsky.social ASN President for a minute for a string of announcements, please share widely!!!

1. Student research awards are open for applications, to fund research expenses for 10 graduate students ($2000 each)
nam10.safelinks.protection.outlook.com?url=https%3A...
Student Research Award
<p>The ASN Student Research Awards support research by student members that advances the goals of the society: the conceptual unification of ecology, evolution, and behavior. Each award consists of a ...
nam10.safelinks.protection.outlook.com
November 25, 2025 at 5:55 PM
Reposted by Fausto Rodríguez Zapata
As undergrad I had to purify and crystallize a new protein that kept aggregating no matter what. In distress fantasized about an algorithm to predict good buffer conditions & mutations.

This dataset + what’s in PDB already would be a decent start.
New preprint! We measured temperature- and pH-induced aggregation for over 18,000 natural and de novo designed protein domains!
November 25, 2025 at 6:24 PM
Reposted by Fausto Rodríguez Zapata
Roses don’t just defend themselves. Their prickles are geometrically ideal for gripping surfaces, supporting vertical growth, and, when needed, creating lacerations that deter herbivores. Students - join us to investigate how biological form and physical law work together!
November 25, 2025 at 5:31 PM
Reposted by Fausto Rodríguez Zapata
when we say we want more streets to be pedestrianized, this is what we mean
November 25, 2025 at 4:46 PM
Reposted by Fausto Rodríguez Zapata
Another good example where the data only show correlations and the authors claim causality.

Seriously Plant and Soil... how can you let that slip through the cracks?!?

Keystone microbes mediate root traits and phosphorus uptake to enhance maize crop productivity in intercropping systems
Keystone microbes mediate root traits and phosphorus uptake to enhance maize crop productivity in intercropping systems
Background and aims Intercropping has been demonstrated to enhance crop productivity and phosphorus (P) uptake, in which root-microbe interactions played crucial roles. Our previous results showed that this beneficial effect of intercropping depends largely on a match between root traits and rhizosphere processes. However, little is known about the role of soil microbial communities in underground processes. Methods Using a long-term field experiment with three P-fertilizer application rates and five cropping systems of maize, we integrated crop productivity, root physiological traits, root morphological traits and microbial amplicon sequencing data. Results Our findings revealed that intercropping significantly enhanced maize crop productivity and P uptake, accompanied by increased plasticity of morphological and physiological root traits compared with monoculture. Additionally, intercropping with different companion crops significantly altered the soil microbial community structure of maize, while P-fertilizer application rates had minimal effect. Network analysis showed that intercropping promoted more complex and stable microbial networks characterized with increased cooperative relationships, relative to monoculture. The relative abundance of keystones enriched in intercropping systems were positively correlated with crop productivity and P uptake, explaining 41.11% of the variation in maize grain yield. Structural equation modeling (SEM) further indicated that keystones enhanced grain yields of maize by inducing carboxylate secretion and fostering more acquisitive root morphological traits. Conclusion Our study elucidates how intercropping optimizes root-microbe synergies to improve P efficiency, highlighting the potential for targeted manipulation of keystone microbial taxa to enhance P acquisition and crop performance in sustainable agricultural systems.
sco.lt
November 24, 2025 at 11:04 PM
Reposted by Fausto Rodríguez Zapata
We (Nordborg & Weigel labs) need input on the next generation of genome browsers & data download modes for the #Arabidopsis #1001GenomesPlus project. We have now a curated collection of over 500 long read genomes.

Please help us by filling out this questionnaire: docs.google.com/forms/d/e/1F...
Next generation of 1001 Genomes Plus browser and data download
Please indicate all features you would like to see in a browser that displays features of completely sequenced Arabidopsis thaliana genomes
docs.google.com
November 24, 2025 at 2:49 PM
Reposted by Fausto Rodríguez Zapata
When Trees Testify
Science, Wisdom, History, and America’s Black Botanical Legacy
Author: Beronda L. Montgomery
January 20, 2026
us.macmillan.com/books/978125...
#FallOfFreedom #ARRoundUp
November 22, 2025 at 10:41 PM
Reposted by Fausto Rodríguez Zapata
So many people are self sabotaging by deskilling via this nonsense right now. Want an edge in 2027? Don’t build reliance on bad tools into your process in 2025.
Relying on ChatGPT to teach you about a topic leaves you with shallower knowledge than Googling and reading about it, according to new research that compared what more than 10,000 people knew after using one method or the other.

Shared by @gizmodo.com: buff.ly/yAAHtHq
November 21, 2025 at 2:21 PM
Reposted by Fausto Rodríguez Zapata
I'm offering a PhD project together with Sarah McKim on temperature-controlled stomata formation within EASTBIO DTP www.findaphd.com/phds/project... #plantscience #plantscijobs Deadline 15 Feb. Please share/RP
EASTBIO - How plants breathe in a warming world: unravelling temperature control of stomata development at University of Dundee on FindAPhD.com
PhD Project - EASTBIO - How plants breathe in a warming world: unravelling temperature control of stomata development at University of Dundee, listed on FindAPhD.com
www.findaphd.com
November 18, 2025 at 7:34 PM
Reposted by Fausto Rodríguez Zapata
www.jobs.ac.uk/job/DPI115/r...

A postdoc position is open in my group for a bioinformatician with expertise in RNA-seq as part of our tree speedbreeding project with @forest-protection.bsky.social.

If interested in speeding trees, please apply, deadline Dec 2nd 🙂
#Plantscience
#Plantscijobs
Research Fellow (Postdoctoral) at University of Birmingham
An opportunity for an academic position as a Research Fellow (Postdoctoral) is available, as advertised on jobs.ac.uk. Apply now and explore other academic job openings.
www.jobs.ac.uk
November 18, 2025 at 6:10 PM
Reposted by Fausto Rodríguez Zapata
Science People: We at NSF are still recovering/catching up/getting our lives together. But the agency posted these FAQs about post-shutdown resumption of operations which might answer a lot of Qs for you: www.nsf.gov/resumption-o...
Resumption of Operations at NSF
Information for NSF staff and the research community regarding the agency's resumption of operations after a lapse in appropriations.
www.nsf.gov
November 18, 2025 at 6:08 PM
Reposted by Fausto Rodríguez Zapata
It’s ridiculous. One easy way to decrease international collaboration would be to … fund science in the US well!
November 14, 2025 at 4:08 PM
Reposted by Fausto Rodríguez Zapata
Design stable, folded proteins using only the 10 "ancient" amino acids.

www.biorxiv.org/content/10.1...
October 31, 2025 at 7:40 PM
Reposted by Fausto Rodríguez Zapata
A Sharon Begley byline, almost 5 years after her death.

Upon hearing the news James Watson had died, a STAT reporter said in our Slack, "I wish I could read what Sharon would have written."

Incredible news: Sharon in fact did pre-write a Watson obit. And it is masterful and excoriating.
🧪🧬🧫
James Watson, dead at 97, was a scientific legend and a pariah among his peers
James Watson, the co-discoverer of the structure of DNA who died Thursday at 97, was a scientific legend and a pariah among his peers.
www.statnews.com
November 8, 2025 at 1:39 PM
Reposted by Fausto Rodríguez Zapata
Plant miRNAs influence soil bacterial growth and amino acid uptake, restructuring community composition

-in #ISMEComms

academic.oup.com/ismecommun/a...
Plant miRNAs influence soil bacterial growth and amino acid uptake, restructuring community composition
Abstract. Plants and microbes use many strategies to acquire soil amino acids. Recent findings suggest that genes related to amino acid metabolism and tran
academic.oup.com
November 9, 2025 at 11:33 AM
Reposted by Fausto Rodríguez Zapata
I was a UC PPFP fellow when I was a postdoc at UCSD. This program is invaluable--aside from support for two years of my postdoc, I received excellent mentoring from faculty at the UCs. This fellowship set me up for success and gave me a cohort of fellow postdocs who are now UC faculty. 1/2
A devastating set of decisions on the part of UC leadership to withdraw support from our nationally recognized postdoc program that prioritizes research excellence combined with addressing our university public service mission. www.insidehighered.com/news/faculty...
UC to Stop Funding Systemwide Postdoc Program
Established in 1984 to encourage women and minority Ph.D.s to pursue academia, the program has attracted right-wing criticism for prioritizing diverse candidates.
www.insidehighered.com
November 7, 2025 at 1:31 AM
Reposted by Fausto Rodríguez Zapata
Do you teach #rstats? Do your students complain about how lame and old-fashioned dplyr is? Don't worry: I have the solution for you: github.com/hadley/genzp....

genzplyr is dplyr, but bussin fr fr no cap.
GitHub - hadley/genzplyr: dplyr but make it bussin fr fr no cap
dplyr but make it bussin fr fr no cap. Contribute to hadley/genzplyr development by creating an account on GitHub.
github.com
November 6, 2025 at 11:25 PM
Reposted by Fausto Rodríguez Zapata
Farmworkers in Oxnard, CA are harvesting marigolds just in time for #DiaDeLosMuertos. The marigold is sometimes called Flor de Muerto (“Flower of the Dead”). These flowers are thought to attract the souls of the dead to the offerings and ensure eternal peace.
November 1, 2025 at 8:00 PM