Simon F. Nørrelykke
@simonfn.bsky.social
BioImage analysis and teaching Harvard Medical School |
Previously ETH, Princeton, MPI-PKS, LENS, Niels Bohr Institute, University of Oxford, Aarhus University.
https://iac.hms.harvard.edu
Previously ETH, Princeton, MPI-PKS, LENS, Niels Bohr Institute, University of Oxford, Aarhus University.
https://iac.hms.harvard.edu
Pinned
💻 Apply to our beginner-friendly Boston Bioimage Analysis Course!
Get started with Python and learn to analyze fluorescence microscopy images — no coding experience required!
Fee waivers available thanks to funding from @bioimagingna.bsky.social!
🗓️ Apply June 1st!
iac.hms.harvard.edu/bobiac/2025/
Get started with Python and learn to analyze fluorescence microscopy images — no coding experience required!
Fee waivers available thanks to funding from @bioimagingna.bsky.social!
🗓️ Apply June 1st!
iac.hms.harvard.edu/bobiac/2025/
Thanks to generous support from @bioimagingna.bsky.social
we now have even more fee-waivers for our workshop.
No funds, but want to learn? Apply below.
we now have even more fee-waivers for our workshop.
No funds, but want to learn? Apply below.
Reposted by Simon F. Nørrelykke
We moved the AI@MBL course "Deep Learning for Microscopy Image Analysis" to HHMI Janelia (@hhmijanelia.bsky.social).
Join us for two weeks of intense lectures, exercise, and hands-on project work!
Course dates: June 4-18 2026
Application by: January 15 2026
www.janelia.org/you-janelia/...
Join us for two weeks of intense lectures, exercise, and hands-on project work!
Course dates: June 4-18 2026
Application by: January 15 2026
www.janelia.org/you-janelia/...
November 17, 2025 at 7:44 PM
We moved the AI@MBL course "Deep Learning for Microscopy Image Analysis" to HHMI Janelia (@hhmijanelia.bsky.social).
Join us for two weeks of intense lectures, exercise, and hands-on project work!
Course dates: June 4-18 2026
Application by: January 15 2026
www.janelia.org/you-janelia/...
Join us for two weeks of intense lectures, exercise, and hands-on project work!
Course dates: June 4-18 2026
Application by: January 15 2026
www.janelia.org/you-janelia/...
Reposted by Simon F. Nørrelykke
Job alert!
We are looking for a bioimage analysis to work in an image analysis core facility in beautiful Paris. Can I ask you to share this opportunity with your networks?
See also on the forum:
forum.image.sc/t/research-e...
We are looking for a bioimage analysis to work in an image analysis core facility in beautiful Paris. Can I ask you to share this opportunity with your networks?
See also on the forum:
forum.image.sc/t/research-e...
Research engineer in Bioimage Analysis for the researchers of the inIdEx FORMULA
Hi all We are looking for a bioimage analysis to work in an image analysis core facility in beautiful Paris. Can I ask you to share this opportunity with your networks? The position is in the Instit...
forum.image.sc
October 7, 2025 at 12:39 PM
Job alert!
We are looking for a bioimage analysis to work in an image analysis core facility in beautiful Paris. Can I ask you to share this opportunity with your networks?
See also on the forum:
forum.image.sc/t/research-e...
We are looking for a bioimage analysis to work in an image analysis core facility in beautiful Paris. Can I ask you to share this opportunity with your networks?
See also on the forum:
forum.image.sc/t/research-e...
Reposted by Simon F. Nørrelykke
📣 We’re hiring, please RT! Fully funded 4-year PhD position in our CVPD group at @informatikaehu.bsky.social!
Research at the intersection of AI, deep learning & bioimage analysis. 🧠🔬
📅 Applications open Oct 6 (deadline: ~Oct 27)
📍 San Sebastian, Spain.
👉 cvpd.github.io/post/2025-09...
Research at the intersection of AI, deep learning & bioimage analysis. 🧠🔬
📅 Applications open Oct 6 (deadline: ~Oct 27)
📍 San Sebastian, Spain.
👉 cvpd.github.io/post/2025-09...
📢 Open 4-year PhD Position in Deep Learning for Bioimage Analysis! | CVPD Research group
The Computer Vision and Pattern Discovery (CVPD) group at the University of the Basque Country (UPV/EHU) is offering a fully funded 4-year PhD position within the recently awarded project TOSBI: Towar...
cvpd.github.io
September 30, 2025 at 11:01 AM
📣 We’re hiring, please RT! Fully funded 4-year PhD position in our CVPD group at @informatikaehu.bsky.social!
Research at the intersection of AI, deep learning & bioimage analysis. 🧠🔬
📅 Applications open Oct 6 (deadline: ~Oct 27)
📍 San Sebastian, Spain.
👉 cvpd.github.io/post/2025-09...
Research at the intersection of AI, deep learning & bioimage analysis. 🧠🔬
📅 Applications open Oct 6 (deadline: ~Oct 27)
📍 San Sebastian, Spain.
👉 cvpd.github.io/post/2025-09...
Reposted by Simon F. Nørrelykke
Do you like theoretical biology, mathematical&conceptual modelling and want to apply yourself to cutting-edge research at all levels of biology, from molecules to ecosystems?
Come to EMBL! Scope includes physics-based models, emergence, statistics, ML/AI
embl.wd103.myworkdayjobs.com/en-US/EMBL/j...
Come to EMBL! Scope includes physics-based models, emergence, statistics, ML/AI
embl.wd103.myworkdayjobs.com/en-US/EMBL/j...
September 29, 2025 at 7:03 AM
Do you like theoretical biology, mathematical&conceptual modelling and want to apply yourself to cutting-edge research at all levels of biology, from molecules to ecosystems?
Come to EMBL! Scope includes physics-based models, emergence, statistics, ML/AI
embl.wd103.myworkdayjobs.com/en-US/EMBL/j...
Come to EMBL! Scope includes physics-based models, emergence, statistics, ML/AI
embl.wd103.myworkdayjobs.com/en-US/EMBL/j...
Reposted by Simon F. Nørrelykke
🚨 Wow, that really sounds like an amazing opportunity… If I were a bit younger, I would start preparing my application already… 😮
www.scilifelab.se/news/ready-t...
www.scilifelab.se/news/ready-t...
Ready to shape the future of AI in life science?
The next call for DDLS Fellows is opening soon, offering an outstanding opportunity for ambitious young researchers to establish their own internationally competitive research groups. This round has a...
www.scilifelab.se
September 12, 2025 at 1:46 PM
🚨 Wow, that really sounds like an amazing opportunity… If I were a bit younger, I would start preparing my application already… 😮
www.scilifelab.se/news/ready-t...
www.scilifelab.se/news/ready-t...
Reposted by Simon F. Nørrelykke
Come and work with us 5-year position available for a University Researcher in Bioimaging 1.11.2025-31.12.2030
abo.rekrytointi.com/paikat/index...
abo.rekrytointi.com/paikat/index...
University Researcher in Bioimaging / Universitetsforskare med inriktning bioimaging, 1.11.2025-31.12.2030
abo.rekrytointi.com
September 10, 2025 at 11:28 AM
Come and work with us 5-year position available for a University Researcher in Bioimaging 1.11.2025-31.12.2030
abo.rekrytointi.com/paikat/index...
abo.rekrytointi.com/paikat/index...
Reposted by Simon F. Nørrelykke
Check out our amazing #bobiac2025 cohort! Was a joy to teach this group! Thanks @bioimagingna.bsky.social for generously supporting this 6 week bioimage analysis w/Python course!
July 29, 2025 at 6:20 PM
Check out our amazing #bobiac2025 cohort! Was a joy to teach this group! Thanks @bioimagingna.bsky.social for generously supporting this 6 week bioimage analysis w/Python course!
Reposted by Simon F. Nørrelykke
Day 1 of #bobiac2025 🐍
The day started strong with @talley.codes speaking about the Python ecosystem and uv. Students then gave short talks about their research (#coolscience). It was then time to code in Python with @sciencedoodles.bsky.social!
The day started strong with @talley.codes speaking about the Python ecosystem and uv. Students then gave short talks about their research (#coolscience). It was then time to code in Python with @sciencedoodles.bsky.social!
July 14, 2025 at 8:28 PM
Day 1 of #bobiac2025 🐍
The day started strong with @talley.codes speaking about the Python ecosystem and uv. Students then gave short talks about their research (#coolscience). It was then time to code in Python with @sciencedoodles.bsky.social!
The day started strong with @talley.codes speaking about the Python ecosystem and uv. Students then gave short talks about their research (#coolscience). It was then time to code in Python with @sciencedoodles.bsky.social!
First day of #bobiac2025. Six days of intensive Python based #BioImageAnalysis. Intro by @fedegasparoli.bsky.social
- "This will be a long week, but it will change your life".
iac.hms.harvard.edu/bobiac/2025/
- "This will be a long week, but it will change your life".
iac.hms.harvard.edu/bobiac/2025/
July 14, 2025 at 1:30 PM
First day of #bobiac2025. Six days of intensive Python based #BioImageAnalysis. Intro by @fedegasparoli.bsky.social
- "This will be a long week, but it will change your life".
iac.hms.harvard.edu/bobiac/2025/
- "This will be a long week, but it will change your life".
iac.hms.harvard.edu/bobiac/2025/
Reposted by Simon F. Nørrelykke
A major KI initiative to recruit new assistant professors with outstanding proposals in all areas of medicine, biomedicine and public health. We offer an amazing research environment, great colleagues and generous startup packages. Check it out and get working on your applications! (repost please!)
Applications are now open! We are recruiting 20 Assistant Professors in a wide range of subject areas. We're looking for early-career researchers with strong scientific merits and future potential.
🔗 All positions: ki.se/en/about-ki/...
🔗 All positions: ki.se/en/about-ki/...
June 25, 2025 at 10:08 AM
A major KI initiative to recruit new assistant professors with outstanding proposals in all areas of medicine, biomedicine and public health. We offer an amazing research environment, great colleagues and generous startup packages. Check it out and get working on your applications! (repost please!)
Reposted by Simon F. Nørrelykke
Are you looking for a postdoc?
I will be looking for 2-4 people after the summer to join the lab !!
Do not hesitate to reach out and disseminate !!
I will be looking for 2-4 people after the summer to join the lab !!
Do not hesitate to reach out and disseminate !!
June 23, 2025 at 2:29 PM
Are you looking for a postdoc?
I will be looking for 2-4 people after the summer to join the lab !!
Do not hesitate to reach out and disseminate !!
I will be looking for 2-4 people after the summer to join the lab !!
Do not hesitate to reach out and disseminate !!
Reposted by Simon F. Nørrelykke
Come and work with us!
Super exciting and relevant projects!
Become an #AI pro and do something positive for the 🌍!
👩🎓 🧑🎓
If you know someone who might be interested… please repost and/or forward this! 🙏
Super exciting and relevant projects!
Become an #AI pro and do something positive for the 🌍!
👩🎓 🧑🎓
If you know someone who might be interested… please repost and/or forward this! 🙏
🚀 Fully-funded #PhD opportunity in Computational Biology with our @florianjug.bsky.social Group through Politecnico of Milan DADS programme! Co-supervision by Francesca Ieva.
🧬 Use #AI to decode complex biological data across scales.
Apply by 9 July 👉 humantechnopole.it/en/news/1-fu...
🧬 Use #AI to decode complex biological data across scales.
Apply by 9 July 👉 humantechnopole.it/en/news/1-fu...
June 9, 2025 at 7:51 AM
Come and work with us!
Super exciting and relevant projects!
Become an #AI pro and do something positive for the 🌍!
👩🎓 🧑🎓
If you know someone who might be interested… please repost and/or forward this! 🙏
Super exciting and relevant projects!
Become an #AI pro and do something positive for the 🌍!
👩🎓 🧑🎓
If you know someone who might be interested… please repost and/or forward this! 🙏
Reposted by Simon F. Nørrelykke
‼️3 days left to apply to the Boston Bioimage Analysis Course (BoBiAC)! 💻
Get started w/Python & learn to analyze fluorescence microscopy images — no programming experience required!
Fee waivers available!
🗓️ Apply by June 1st!
🌐 iac.hms.harvard.edu/bobiac/2025/
Get started w/Python & learn to analyze fluorescence microscopy images — no programming experience required!
Fee waivers available!
🗓️ Apply by June 1st!
🌐 iac.hms.harvard.edu/bobiac/2025/
May 30, 2025 at 3:16 PM
‼️3 days left to apply to the Boston Bioimage Analysis Course (BoBiAC)! 💻
Get started w/Python & learn to analyze fluorescence microscopy images — no programming experience required!
Fee waivers available!
🗓️ Apply by June 1st!
🌐 iac.hms.harvard.edu/bobiac/2025/
Get started w/Python & learn to analyze fluorescence microscopy images — no programming experience required!
Fee waivers available!
🗓️ Apply by June 1st!
🌐 iac.hms.harvard.edu/bobiac/2025/
Reposted by Simon F. Nørrelykke
Deadlines extended - you can still register for the GloBIAS conference! We have extended most deadlines. Please check our webpage: tinyurl.com/mr3kx5a5! Looking forward to welcoming you to Kobe, for training, developing and discussing a broad range of BIA topics!
May 15, 2025 at 6:41 PM
Deadlines extended - you can still register for the GloBIAS conference! We have extended most deadlines. Please check our webpage: tinyurl.com/mr3kx5a5! Looking forward to welcoming you to Kobe, for training, developing and discussing a broad range of BIA topics!
Thanks to generous support from @bioimagingna.bsky.social
we now have even more fee-waivers for our workshop.
No funds, but want to learn? Apply below.
we now have even more fee-waivers for our workshop.
No funds, but want to learn? Apply below.
💻 Apply to our beginner-friendly Boston Bioimage Analysis Course!
Get started with Python and learn to analyze fluorescence microscopy images — no coding experience required!
Fee waivers available thanks to funding from @bioimagingna.bsky.social!
🗓️ Apply June 1st!
iac.hms.harvard.edu/bobiac/2025/
Get started with Python and learn to analyze fluorescence microscopy images — no coding experience required!
Fee waivers available thanks to funding from @bioimagingna.bsky.social!
🗓️ Apply June 1st!
iac.hms.harvard.edu/bobiac/2025/
May 8, 2025 at 7:58 PM
Thanks to generous support from @bioimagingna.bsky.social
we now have even more fee-waivers for our workshop.
No funds, but want to learn? Apply below.
we now have even more fee-waivers for our workshop.
No funds, but want to learn? Apply below.
Reposted by Simon F. Nørrelykke
BIG NEWS - for the first time ever, we're running a Bioimage Analysis Beginnings Bootcamp. Learn #bioimageanalysis from awesome folks, and gain familiarity with some new tools as well as how to pick the right tool in the first place. Aug 4th-8th - apply here (soon!) forms.gle/d2fCXsrWHVP8...
May 1, 2025 at 9:22 PM
BIG NEWS - for the first time ever, we're running a Bioimage Analysis Beginnings Bootcamp. Learn #bioimageanalysis from awesome folks, and gain familiarity with some new tools as well as how to pick the right tool in the first place. Aug 4th-8th - apply here (soon!) forms.gle/d2fCXsrWHVP8...
Reposted by Simon F. Nørrelykke
‼BREAKING‼
We’ve secured new funding for the Boston Bioimage Analysis Course (BoBiAC) this July at Harvard Med School! Course fees down 37%, with fee waivers for academic applicants, for an intensive hands-on intro to bioimage analysis with Python!
Apply by June 1st!
iac.hms.harvard.edu/bobiac/2025
We’ve secured new funding for the Boston Bioimage Analysis Course (BoBiAC) this July at Harvard Med School! Course fees down 37%, with fee waivers for academic applicants, for an intensive hands-on intro to bioimage analysis with Python!
Apply by June 1st!
iac.hms.harvard.edu/bobiac/2025
April 22, 2025 at 2:55 PM
‼BREAKING‼
We’ve secured new funding for the Boston Bioimage Analysis Course (BoBiAC) this July at Harvard Med School! Course fees down 37%, with fee waivers for academic applicants, for an intensive hands-on intro to bioimage analysis with Python!
Apply by June 1st!
iac.hms.harvard.edu/bobiac/2025
We’ve secured new funding for the Boston Bioimage Analysis Course (BoBiAC) this July at Harvard Med School! Course fees down 37%, with fee waivers for academic applicants, for an intensive hands-on intro to bioimage analysis with Python!
Apply by June 1st!
iac.hms.harvard.edu/bobiac/2025
Please join in-person if you are nearby, or by Zoom if not.
✨We are proudly hosting 𝐏𝐫𝐨𝐟. 𝐒𝐢𝐱𝐢𝐚𝐧 𝐘𝐨𝐮 (MIT)✨
“𝐂𝐨𝐦𝐩𝐮𝐭𝐚𝐭𝐢𝐨𝐧𝐚𝐥 𝐚𝐱𝐢𝐚𝐥 𝐝𝐞𝐛𝐥𝐮𝐫𝐫𝐢𝐧𝐠 𝐟𝐨𝐫 𝐢𝐬𝐨𝐭𝐫𝐨𝐩𝐢𝐜 𝟑𝐃 𝐦𝐢𝐜𝐫𝐨𝐬𝐜𝐨𝐩𝐲”
𝐀𝐩𝐫𝐢𝐥 𝟐𝟒𝐭𝐡 @ 𝟏𝟏 𝐚𝐦 𝐄𝐃𝐓 (𝐁𝐨𝐬𝐭𝐨𝐧 𝐭𝐢𝐦𝐞, 𝐔𝐒𝐀)
Join us on Zoom!
harvard.zoom.us/j/9307790905...
“𝐂𝐨𝐦𝐩𝐮𝐭𝐚𝐭𝐢𝐨𝐧𝐚𝐥 𝐚𝐱𝐢𝐚𝐥 𝐝𝐞𝐛𝐥𝐮𝐫𝐫𝐢𝐧𝐠 𝐟𝐨𝐫 𝐢𝐬𝐨𝐭𝐫𝐨𝐩𝐢𝐜 𝟑𝐃 𝐦𝐢𝐜𝐫𝐨𝐬𝐜𝐨𝐩𝐲”
𝐀𝐩𝐫𝐢𝐥 𝟐𝟒𝐭𝐡 @ 𝟏𝟏 𝐚𝐦 𝐄𝐃𝐓 (𝐁𝐨𝐬𝐭𝐨𝐧 𝐭𝐢𝐦𝐞, 𝐔𝐒𝐀)
Join us on Zoom!
harvard.zoom.us/j/9307790905...
April 15, 2025 at 10:06 AM
Please join in-person if you are nearby, or by Zoom if not.
Reposted by Simon F. Nørrelykke
In the past 2 days, we had the great pleasure to host an in-person workshop at @istaresearch.bsky.social with the collaboration of @globias.bsky.social, @carpentries.carpentries.org and @istaustria-iof.bsky.social.
We wanted to create a go-to course for image analysis in Python. Info in the thread!
We wanted to create a go-to course for image analysis in Python. Info in the thread!
April 9, 2025 at 11:33 AM
In the past 2 days, we had the great pleasure to host an in-person workshop at @istaresearch.bsky.social with the collaboration of @globias.bsky.social, @carpentries.carpentries.org and @istaustria-iof.bsky.social.
We wanted to create a go-to course for image analysis in Python. Info in the thread!
We wanted to create a go-to course for image analysis in Python. Info in the thread!
Reposted by Simon F. Nørrelykke
Your yearly reminder to acknowledge the core facilities you use and their staff scientists in your papers. These scientists are a crucial part of the scientific ecosystem and to continue to exist they need tangible credit for their work. Plus their associated expertise adds credibility to your work.
April 10, 2025 at 1:38 PM
Your yearly reminder to acknowledge the core facilities you use and their staff scientists in your papers. These scientists are a crucial part of the scientific ecosystem and to continue to exist they need tangible credit for their work. Plus their associated expertise adds credibility to your work.
Reposted by Simon F. Nørrelykke
We wrote an opinion with simple, practical advice for building data exploration workflows in quantitative cell biology with @guijacquemet.bsky.social and @hanna09.bsky.social . I hope you find it useful!
Here we share our opinions on "Practical considerations for data exploration in quantitative cell biology"
journals.biologists.com/jcs/article/...
Joanna, Hanna and I worked quite a bit on this piece and I hope you find it useful
Many thanks to @jcellsci.bsky.social for publishing it
journals.biologists.com/jcs/article/...
Joanna, Hanna and I worked quite a bit on this piece and I hope you find it useful
Many thanks to @jcellsci.bsky.social for publishing it
Practical considerations for data exploration in quantitative cell biology
Summary: We present practical guidelines for data exploration in quantitative cell biology that are designed to help yield reliable conclusions and promote a collaborative, transparent approach to dat...
journals.biologists.com
April 8, 2025 at 5:26 AM
We wrote an opinion with simple, practical advice for building data exploration workflows in quantitative cell biology with @guijacquemet.bsky.social and @hanna09.bsky.social . I hope you find it useful!
Reposted by Simon F. Nørrelykke
Delighted to announce that @erinweisbart.bsky.social and I have teamed up to create a new bioimage analysis video podcast called Ask Erin/Dear Beth - you can check it out at the link below! It will highlight common challenges in #bioimageanalysis, as well as our favorite solutions to them. (1/x)
Ask Erin, Dear Beth
On Ask Erin/Dear Beth, bioimage analysis experts Beth Cimini and Erin Weisbart, of the Imaging Platform at the Broad Institute of MIT and Harvard, answer your image analysis questions! Whether it’s ab...
www.youtube.com
April 7, 2025 at 10:11 PM
Delighted to announce that @erinweisbart.bsky.social and I have teamed up to create a new bioimage analysis video podcast called Ask Erin/Dear Beth - you can check it out at the link below! It will highlight common challenges in #bioimageanalysis, as well as our favorite solutions to them. (1/x)
April 8, 2025 at 9:56 AM
Reposted by Simon F. Nørrelykke
Another in-person event from #GloBIAS Together with #Data Carpentry. Thanks to the GloBIAS volunteers at ISTA for organising and hosting us! #BioImageAnalysis #Python
April 8, 2025 at 8:03 AM
Another in-person event from #GloBIAS Together with #Data Carpentry. Thanks to the GloBIAS volunteers at ISTA for organising and hosting us! #BioImageAnalysis #Python
Reposted by Simon F. Nørrelykke
Preprint (update) alert!
F-BIAS: Towards a distributed national core facility for Bioimage Analysis. (arxiv.org/abs/2409.15009)
0/ In this paper we discuss our experience in federating ourselves and delivering bioimage analysis services to the scientific community in France.
👇 a short thread
F-BIAS: Towards a distributed national core facility for Bioimage Analysis. (arxiv.org/abs/2409.15009)
0/ In this paper we discuss our experience in federating ourselves and delivering bioimage analysis services to the scientific community in France.
👇 a short thread
F-BIAS: Towards a distributed national core facility for Bioimage Analysis.
arxiv.org
March 31, 2025 at 7:39 AM
Preprint (update) alert!
F-BIAS: Towards a distributed national core facility for Bioimage Analysis. (arxiv.org/abs/2409.15009)
0/ In this paper we discuss our experience in federating ourselves and delivering bioimage analysis services to the scientific community in France.
👇 a short thread
F-BIAS: Towards a distributed national core facility for Bioimage Analysis. (arxiv.org/abs/2409.15009)
0/ In this paper we discuss our experience in federating ourselves and delivering bioimage analysis services to the scientific community in France.
👇 a short thread