Isaac García
@isaacgs94.bsky.social
86 followers 120 following 5 posts
PhD candidate @ Sanger institute Views are my own
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Reposted by Isaac García
ceciliapad.bsky.social
This package is a game changer for population genetics. You can do pretty much all of the “usual” analyses, in R, and at a super fast speed 😍😍😍

So thanks mainly Evie and Andrea for creating this for all of us!
Reposted by Isaac García
hilarycmartin.bsky.social
Delighted that the 'flagship' manuscript on our @genesandhealth.bsky.social 44k exomes (British Pakistanis & Bangladeshis) is now preprinted. Great academic-industry collaboration. Lots of new associations (mostly additive, a few recessive) and new insights into homoz knockouts & drug discovery.
isaacgs94.bsky.social
Check out the new pre-print from Luci! 👇🏾 Super cool work highlighting the discovery of a blood biomarker of IBD! 👀🧬🔬
luciaramirez.bsky.social
🚨 SUPER EXCITED to share our new preprint on the mucosal and circulatory immune landscape of Crohn’s disease!

🩸 Blood is commonly used in biomarker discovery and drug development, but how well does it reflect what's actually happening in the gut? 👀

🧵 1/10
🔗 www.medrxiv.org/content/10.1...
Tissue-specific and circulatory immune signatures of mucosal inflammation in Crohn's disease
Crohn's disease (CD) is a heterogeneous disease characterized by chronic inflammation of the gastrointestinal tract driven by an aberrant immune response. To understand the immune mechanisms underlyin...
www.medrxiv.org
isaacgs94.bsky.social
All the nitty gritty details in the paper! Many thanks to everyone who was part of this journey, including all of the participants of the 100,000 Genomes project @genomicsengland.bsky.social
isaacgs94.bsky.social
We report DNM rate and spectra differences between genetically inferred ancestral populations 🗺️🧬 and an association between smoking behaviour 🚬 and DNM rate.
Reposted by Isaac García
fungage-lab.bsky.social
We did it! We caught Starship #transposons moving between #fungal species in the lab, including between species separated by ~100my. We think Starships are a mediator of HGT in fungi, akin to conjugative elements in bacteria. Check out the preprint. www.biorxiv.org/content/10.1...
Illustration depicting the ways in which fungi can exchange genetic material with each other. Starship mediated HGT is confirmed experimentally in this preprint.
Reposted by Isaac García
roychoudhurilab.bsky.social
Thrilled to share new work led by @jieyang437.bsky.social in the lab published today in @Nature. We find that Aspirin prevents metastasis by releasing T cells from immune suppression by platelet TXA2. @Cambridge_Uni @CRUKCamCentre rdcu.be/eci1U
Reposted by Isaac García
Reposted by Isaac García
itaiyanai.bsky.social
I want to tell you a story about computers, creativity and art. (1/N) 🧵
Sydney Brenner once said in 2012 that “nobody has actually read the human genome. I mean, computers have processed the human genome, but we all know computers are stupid.”
(Summary of a talk I gave at the Sanger last week)
Reposted by Isaac García
Reposted by Isaac García
mendelrandom.bsky.social
Contralateral cancers are an enigma: the unaffected organ is perfectly matched on exposures across life, yet despite this at older ages the risk of cancer in that organ is not much higher than a randomly selected organ from the same population. What can be happening? youtu.be/7rbsGpz9-XE
Reposted by Isaac García
Reposted by Isaac García
sashagusevposts.bsky.social
We finally have some well-powered whole-genome heritability estimates, including a quasi-behavioral trait (BMI). For height, ~89% of the heritability estimated to reside in common variants. For BMI and WHR, ~100% estimated in common variants.

www.biorxiv.org/content/10.1...
Reposted by Isaac García
aylwyn-scally.bsky.social
Quantitative genetics is poorly understood by many biologists, and that's surely a failure in how it is taught. But teaching biology as 'fundamentally complex' seems like one of the least promising educational ideas since those 1970s schools that made lessons optional.
www.cell.com/cell-systems...
Should biology put complexity first?
The dictum “Everything should be made as simple as possible, but no simpler” poses a problem for biology. How simply can it be told without doing damage to its complex nature? The answer might be foun...
www.cell.com
Reposted by Isaac García
Reposted by Isaac García
aylwyn-scally.bsky.social
We are excited to announce a new faculty position here in Cambridge, for researchers in computational and/or theoretical biology, based jointly in Genetics and Mathematics. Come and join us! Happy to answer questions about research, teaching and working here. www.jobs.cam.ac.uk/job/50414/
Assistant/Associate Professor in Computational Biology - Job Opportunities - University of Cambridge
Assistant/Associate Professor in Computational Biology in the Department of Applied Mathematics and Theoretical Physics at the University of Cambridge.
www.jobs.cam.ac.uk