Animalcules
bacteriophile.bsky.social
Animalcules
@bacteriophile.bsky.social
Bacteria lover. Good, bad, or other wise. Beneficial, commensal, or pathogenic alike.
Authorized GMB (Genetically Modified Bacteria) scientist
Reposted by Animalcules
Pleased to share our brief commentary on how antiplatelet drugs such as ticagrelor (Brilinta) may have an intriguing beneficial action toward effective treatment of Staphylococcus aureus bacteremia and endovascular infection

#drugrepurposing
Bridging specialties: repurposing platelet drugs prescribed by cardiologists to help infectious disease doctors treat Staphylococcus aureus bacteremia
The platelet is the most important cell in the bloodstream in providing endovascular immunity against Staphylococcus aureus bacteremia. Both quantitative and qualitative thrombocytopenia have been ...
www.tandfonline.com
January 20, 2026 at 1:29 AM
Reposted by Animalcules
A study in Nature Microbiology can inform future clinical interventions for auto-brewery syndrome, which is caused by gut microorganisms capable of producing ethanol that cause alcohol intoxication. go.nature.com/3NnRNXR #microsky #medsky 🧪
January 16, 2026 at 11:09 PM
People with autobrewery syndrome had increased levels of the ethanol-producing bacteria Escherichia coli, according to a new study.

Learn more: https://scim.ag/3LJGLeY
January 17, 2026 at 8:49 AM
Bacteria are amazing! The abundant Dps protein binds and protects DNA in stationary-phase cells with minimal effect on chromosome accessibility, dynamics, and organization. Now in NAR doi.org/10.1093/nar/...; I'm really proud of our multidisciplinary team led by Lauren, Lindsay, and Xiaofeng, et al.
January 16, 2026 at 11:16 PM
Reposted by Animalcules
Two D-loop resolution systems enable natural genetic transformation in bacteria www.biorxiv.org/content/10.1...
Two D-loop resolution systems enable natural genetic transformation in bacteria
Natural transformation is a widespread mechanism driving genetic exchanges in bacteria. It proceeds by the capture and internalization of exogenous DNA in linear single strands, ultimately integrated in the genome by homologous recombination. It is unknown how the RecA-directed D-loop intermediate of this dedicated recombination pathway is processed. We report that resolution of the transformation D-loop depends on two endonucleases of opposing phylogenetic distribution in bacteria. One is YraN, which has co-evolved and interacts with the ComM helicase, known to extend DNA recombination at the transformation D-loop. The other is CoiA, which is restricted to the Bacillota. CoiA is shown to be a resolvase of the transformation D-loop, extended by the RadA helicase in these species. We demonstrate that both YraN and CoiA act synergistically with their cognate helicases. These findings reveal that bacteria have evolved two helicase/nuclease pairs for the maturation and recombination extension of the transformation D-loop. ### Competing Interest Statement The authors have declared no competing interest. Agence Nationale de la Recherche, https://ror.org/00rbzpz17, ANR-20-CE12-0004, ANR-10-BLAN-1331, ANR-17-CE13-0031, ANR-22-CE44-0044, ANR-10-LABX-62-IBEID, PIA/ANR-16-CONV-0005 Fondation pour la Recherche Médicale, https://ror.org/04w6kn183, FDT202001010890 European Union's Horizon research and innovation programme. Marie Skłodowska-Curie Postdoctoral Fellowships, 101208987 National Institute of Health, USA, R35GM128674
www.biorxiv.org
January 16, 2026 at 9:50 AM
Reposted by Animalcules
#chemsky here is our recent preprint on cyclic lanthanide-binding peptides. @sophieguti.bsky.social @hhu.de and our collaborators @hzdr.bsky.social and @kit.edu have put in an immense amount of analytical work to understand binding in these peptides. Check it out! We even snuck some #curium in 🤓🧪
(ChemRxiv) Let’s Get Cyclic – Influence of Head-to-Tail Cyclisation of Lanmodulin-inspired peptides on Lanthanide Affinity and Structure: Over the recent years lanthanide-binding proteins such as lanmodulin, a naturally lanthanide-binding EF-hand protein from… (RSS) #chemrxiv #MassSpecRSS
Let’s Get Cyclic – Influence of Head-to-Tail Cyclisation of Lanmodulin-inspired peptides on Lanthanide Affinity and Structure
Over the recent years lanthanide-binding proteins such as lanmodulin, a naturally lanthanide-binding EF-hand protein from Methylorubrum extorquens AM1, as well as protein-inspired lanthanide-binding peptides have become of increasing interest for the development of separation and recycling methods for rare earth elements. For the first time, a set of head-to-tail cyclised lanmodulin-inspired peptides and their complexation behaviour towards lanthanides was comprehensively examined in aqueous media using time-resolved laser induced fluorescence spectroscopy (TRLFS), isothermal titration calorimetry (ITC), nuclear magnetic resonance (NMR) and circular dichroism (CD) spectroscopies, complemented by molecular dynamic (MD) simulations and advanced mass spectrometry methods. Results obtained from this multi-method approach evidence that the head-to-tail cyclisation can indeed increase the lanthanide-affinity in natural sequences and positively impact the pre-organisation of the metal-free peptide while limiting the amount of formed complex species in comparison to linear analogues. Furthermore, the impact of minimal sequence alterations by inserting glycine is shown to be useful in NMR experiments for probing alterations in the local environment of neighbouring amino acids potentially involved in coordination. Lastly, KD values for the peptides with the whole Ln series (except Pm) and the actinide curium are presented.
dlvr.it
January 14, 2026 at 1:21 PM
Reposted by Animalcules
Lipid scavenging by the Lyme disease spirochete Borrelia burgdorferi

By Peter Gwynne and colleagues

#MicroSky
January 15, 2026 at 4:26 AM
Reposted by Animalcules
I didn't even realize how long I had been waiting for a tool like this!
Want to get the data out of a PDF figure? As in, the actual data – not a rough trace-along-the-lines version?

I made an app you might like: adamkucharski.github.io/pdf2plot/

It all started a few years ago... 🧵
January 15, 2026 at 7:36 AM
Reposted by Animalcules
The Nocardioidaceae: obscure bacteria that could be key to cleaning up some of the world's worst pollution.
varietyoflife.net/nocardioidac...
July 16, 2025 at 1:21 AM
Reposted by Animalcules
Characterizing Cell-Free Transcription and Translation Dynamics with Nucleic Acid–Based Assays
doi.org/10.1021/acss...
Characterizing Cell-Free Transcription and Translation Dynamics with Nucleic Acid–Based Assays
Characterization of cell-free expression (CFE) systems must expand beyond single spectrophotometric measurements of a green fluorescent protein to provide meaningful metrics of system performance duri...
doi.org
December 26, 2025 at 10:37 PM
@laasya2.bsky.social @deepaagashe.bsky.social et al. quantified the growth cost of mistranslation rates and exposure to antibiotics in E. coli, finding that altered translation accuracy can shape adaptive outcomes.

🔗 doi.org/10.1093/molbev/msaf312

🖌️ Nishant Asawadekar

#evobio #molbio
December 20, 2025 at 8:27 AM
Reposted by Animalcules
Rolling-circle replication of extracellular DNA by prophage activation in bacterial biofilms ⭕🧬🦠

Biology is crazy and beautiful 🤯

www.biorxiv.org/content/10.6...
December 7, 2025 at 1:08 PM
Reposted by Animalcules
Spx inhibits expression of the SwrA•DegU master flagellar activator in Bacillus subtilis

-in JBacteriol

journals.asm.org/doi/10.1128/...
Spx inhibits expression of the SwrA•DegU master flagellar activator in Bacillus subtilis | Journal of Bacteriology
Bacterial flagella are elaborate machines that are inserted through the bacterial cell envelope. The regulation of flagellar gene expression is organized in hierarchical tiers that largely correlate w...
journals.asm.org
December 6, 2025 at 8:36 PM
Pleased to share our recent article in PNAS - a collaboration with @jessicaandreani.bsky.social & Pablo Radicella, with important roles played by many members of each team.

A tripartite protein complex promotes DNA transport during natural transformation in Firmicutes www.pnas.org/doi/10.1073/...
A tripartite protein complex promotes DNA transport during natural transformation in Firmicutes | PNAS
Natural genetic transformation is a conserved mechanism of bacterial horizontal gene transfer, which is directed entirely by the recipient cell and...
www.pnas.org
November 26, 2025 at 9:22 AM
Reposted by Animalcules
Accelerating science with AI

"By empowering researchers across all disciplines and institutions to accelerate science and engineering, AI could increase the productivity and impact of research, boost innovation, fuel economic growth, and improve people’s lives."

www.science.org/doi/10.1126/...
November 26, 2025 at 3:45 AM