Nick Ilott
nickilott.bsky.social
Nick Ilott
@nickilott.bsky.social
Scientist studying microbiome-host interactions in primary sclerosing cholangitis at the University of Oxford.

#microbiome #scRNAseq #bioinformatics #metagenomics #metabolomics #transcriptomics

I also like drawing: https://www.instagram.com/ilottnick21
Reposted by Nick Ilott
🖥️🧬🚀 I am excited to share that our #omnideconv study is finally published on Genome Biology: doi.org/10.1186/s130...
February 11, 2026 at 5:22 PM
Reposted by Nick Ilott
Congratulations to the wonderful Natasha for successfully defending her DPhil thesis! We’re excited to see what comes next for Natasha and her MAIT cell story whilst she continues her project as a postdoctoral researcher🥳👩‍🔬

@kiroxford.bsky.social
February 11, 2026 at 8:44 PM
Reposted by Nick Ilott
Gut E. coli (esp. pks+/colibactin+) have been thought to be a link between CRC & liver metastasis, possibly by translocating via the portal vein. This work explores in-depth causal mol. mechanisms of liver metastasis promotion by E. coli strains enriched in CRC cases
www.nature.com/articles/s41...
Escherichia coli promotes colorectal cancer metastasis by maintaining enhancer-promoter loops through releasing neutrophil extracellular traps - Nature Communications
Intestinal flora is known to play a role in colorectal cancer metastasis via disruption of the intestinal barrier. Here, the authors discover that Escherichia coli promotes colorectal cancer liver met...
www.nature.com
February 10, 2026 at 3:08 PM
Reposted by Nick Ilott
DEPower: approximate power analysis with DESeq2 www.biorxiv.org/content/10.6... 🧬💻🧪
February 9, 2026 at 3:00 PM
Reposted by Nick Ilott
New GWAS on stool frequency (n=268K) highlights vitamin B1 (thiamine) metabolism as a new modulator of gut motility via SLC35F3/XPR1. In ~98K UKB participants, dietary thiamine intake correlates with stool frequency too w/ these loci + MR predicts causal effects with IBS.
gut.bmj.com/content/earl...
Genetic dissection of stool frequency implicates vitamin B1 metabolism and other actionable pathways in the modulation of gut motility
Background Genetic studies of stool frequency (SF), an indirect proxy for gastrointestinal transit, may reveal therapeutically tractable pathways relevant to IBS and other dysmotility disorders. Obje...
gut.bmj.com
February 9, 2026 at 11:31 AM
Reposted by Nick Ilott
Big congrats to our colleague @krukowskihubert.bsky.social
on the Nature Microbiology paper linking gut transit time and diet to CKD microbiome changes. Another step in microbiome research!🧫
www.nature.com/articles/s41...
Host factors dictate gut microbiome alterations in chronic kidney disease more strongly than kidney function - Nature Microbiology
A covariate-aware analysis reveals that microbiome changes in the gut of patients with chronic kidney disease are better explained by intestinal transit time than by kidney function.
www.nature.com
February 5, 2026 at 3:02 PM
Reposted by Nick Ilott
Do you know someone who needs support returning to research? @macularsociety.org are funding a Daphne Jackson Fellowship to be held at any UK university or research institute.

Please share with your network to get one more #ResearchReturner back to their career. daphnejackson.org/fellowship/m...
February 5, 2026 at 10:46 AM
Reposted by Nick Ilott
Tools
'To address this knowledge gap, we developed “cytokine cellular locating platforms” (CyCLoPs), a reporter system that translates cytokine receptor engagement into a genetically traceable signal.'
#Immunology
www.cell.com/cell/abstrac...
In vivo detection of immune responses via cytokine activity labeling
Cytokine receptor dimerization, induced by the binding of cytokines, can be converted into a genetically traceable fluorescent signal and engineered into reporter mouse lines to visualize processes in...
www.cell.com
February 1, 2026 at 11:41 AM
Reposted by Nick Ilott
The Trust are grateful for the ongoing support from The University of Surrey, who continue to build on the legacy of Professor Daphne Jackson. The Trust spoke with two Daphne Jackson Fellows who were hosted at The University of Surrey about their experience returning to research here.
January 28, 2026 at 7:28 PM
Reposted by Nick Ilott
Excited to share our latest publication, led by Dr. Ellie McCallum and Juan Burckhardt!
bit.ly/4kfzQaf
You can access the article for free here: authors.elsevier.com/a/1mWb4L7PXu... And more information is available on the updated preprint: www.biorxiv.org/content/10.1...
Glowing bacterial sensors detect gut illness in mice before symptoms emerge
UBC researchers have engineered gut bacteria that dim their fluorescent glow in the presence of illness.
bit.ly
January 28, 2026 at 7:54 PM
Reposted by Nick Ilott
Looking for a tool to estimate abundances of aerobes versus anaerobes directly from metagenomes? Here you go: www.biorxiv.org/content/10.6...
www.biorxiv.org
January 26, 2026 at 10:05 PM
Huge thanks to @pscsupport.bsky.social for supporting our work and being a driving force for PSC research! Find out how they have helped us delve into research into a role for the small intestine in PSC pscsupport.org.uk/new-research...
New PSC Support Research Uncovers Critical Link Between Liver and Small Intestine – PSC Support
pscsupport.org.uk
January 26, 2026 at 8:15 PM
Reposted by Nick Ilott
New #PSCSupport research finds high ALP associated with decreased protective genes in the small intestine in #PSC. This suggests the small intestine could be a key target for future treatments, perhaps via the #gutmicrobiome.
Full details: buff.ly/TVpOLd2
#Mission2030
January 26, 2026 at 11:02 AM
Reposted by Nick Ilott
PhD studentships available through our BBSRC-funded doctoral programme.

🦠🧫💻 Contact me if you're interested in using bioinformatics/lab-based approaches with cultivated and uncultivated bacteria of the human microbiome, to identify and characterize novel enzymes with potential biotech applications.
Biotechnology and Biological Sciences Doctoral Training Programme - The University of Nottingham
www.nottingham.ac.uk
January 22, 2026 at 8:58 PM
Reposted by Nick Ilott
Join #TeamPSCSupport and help us fund vital support and research! Whether you run, cycle, or skydive, every mile brings us closer to a cure.
Grab one of our charity places or create your own event!
👉 buff.ly/7qNG1NN #LetsBeatPSC [email protected]
January 18, 2026 at 10:01 AM
Reposted by Nick Ilott
New year, new paper! Thrilled to share that our review “Contextualising TH17 cells in cancer” is out now!

Congratulations to Declan & team for a fantastic, in depth overview🥳

Go give it a read here:
doi.org/10.1038/s415...

@natrevimmunol.nature.com
@kiroxford.bsky.social
Contextualizing TH17 cells in cancer - Nature Reviews Immunology
T helper 17 (TH17) cells can have both pro-tumour and antitumour effects. Understanding how they are regulated by environmental and regulatory cues according to context will inform strategies to harne...
doi.org
January 7, 2026 at 10:53 AM
Reposted by Nick Ilott
If you missed the 2025 @isbscience.org Virtual Microbiome Symposium (theme: how microbial metabolites influence the brain, the immune system, & metabolism), the videos of the talks and the panel discussion are now available here:

youtube.com/playlist?lis...

Thanks to all who helped make it happen!
2025 ISB Microbiome Symposium - YouTube
The 2025 ISB Microbiome Symposium was a virtual scientific event hosted by the Institute for Systems Biology (ISB) on December 12, 2025. The symposium brough...
youtube.com
December 17, 2025 at 4:34 PM
Reposted by Nick Ilott
We’re hiring! Two postdoctoral research positions are available in our lab - one in mucosal immunology, and one in exposome immunology (MRC CoRE)! Apply by December 22nd!🎄

Position 1: tinyurl.com/2mh44tn4
Position 2: tinyurl.com/5ffzxsfb

@kiroxford.bsky.social @exposomeimmunology.bsky.social
Job Details
tinyurl.com
December 9, 2025 at 5:13 PM
Reposted by Nick Ilott
Last night was our Lab Christmas party! Special thanks to Claire and Nick for organising some excellent party games for us (guessing the flavour of Skittles whilst blindfolded is much harder than you’d think!) and to Branca for hosting us🎅🎄🌟

@kiroxford.bsky.social
@nickilott.bsky.social
December 12, 2025 at 9:10 PM
Reposted by Nick Ilott
Hiring: Group Leader in Microbiome Studies! ✨

The successful candidate would establish & lead a new research group in human microbiome science, advancing understanding of microbe-microbe and microbe-host interactions in health & disease.

Apply by 22 Dec.

www.ndorms.ox.ac.uk/jobs/kennedy...
Kennedy Trust for Rheumatology Research (KTRR) Group Leader in Microbiome Studies (183704)
We are seeking applications from an outstanding scientist to establish and lead a new research group in human microbiome science, advancing understanding of microbe–microbe and microbe–host interactio...
www.ndorms.ox.ac.uk
December 9, 2025 at 9:23 AM
Reposted by Nick Ilott
Congratulations to our fantastic DPhil student, Henry, for defending his PhD thesis today!! It’s been a pleasure to have Henry in the lab & we miss him already! Go check out the review (linked below) if you’d like to see some of his work🥳🧑‍🔬

@kiroxford.bsky.social

pubmed.ncbi.nlm.nih.gov/40252635/
December 8, 2025 at 4:54 PM
Reposted by Nick Ilott
We are hiring a Postdoctoral Research Assistant to study how microbiomes influence barrier biology and shape responses to viral infection!

This post is part of the exciting new MRC CoRE in Exposome Immunology.

Apply by December 18 👇

www.kennedy.ox.ac.uk/jobs/postdoc...
Postdoctoral Research Assistant - MRC CoRE in Exposome Immunology (183191)
You will lead delivery of a CoRE research project, managing your own research and coordinating project activities to meet deadlines. The role includes developing and adapting scientific techniques, an...
www.kennedy.ox.ac.uk
December 3, 2025 at 4:43 PM
Reposted by Nick Ilott
We’re very proud of our very own Dr Alice Bertocchi for winning a Kennedy Trust Transition Fellowship! Keep up the amazing work as always, Ali!🥳❤️
December 6, 2025 at 6:34 PM