Claire Patiou, PhD.
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cpatiou.bsky.social
Claire Patiou, PhD.
@cpatiou.bsky.social
PhD from @Evo_Eco_Paleo
Post-doctoral research associate @bornberglab.bsky.social‬
Interested in small but mighty ORFs
#genomics #evolution #bioinformatics

https://www.researchgate.net/profile/Claire_Patiou?_tp=eyJjb250ZXh0Ijp7ImZpcnN0UGFnZSI6InB1YmxpY
Reposted by Claire Patiou, PhD.
🚨Hiring a postdoc!

Are you interested in #evolutionarygenomics, #sexchromosomes, #transposableelements & #Sexspecific #recombination in 🐸🧬?

Join my lab @vubrussel.bsky.social
🔹 @fwovlaanderen.bsky.social funded up to 3y
🔹 Deadline 10/3/2026
🔹 Start ~1/6/2026

Apply 👉: jobs.vub.be/job/Elsene-P...
January 22, 2026 at 9:37 AM
🧬 What does the starting material from which genes could emerge #denovo look like?
🌱 We used #RiboSeq to investigate the landscape of translated de novo ORFs in 3 #Arabidopsis species, and how they might be linked to gene birth!

📝 Check out our preprint here:
doi.org/10.1101/2025...
Pervasive translation of short open reading frames and de novo gene emergence in Arabidopsis
Ancestrally non-genic sequences are now widely recognized as potential reservoirs for the de novo emergence of new genes. Across clades, some de novo genes were proven to have substantial phenotypic effects, and to contribute to the emergence of novel biological functions. Yet, still very little is known about the starting material from which de novo genes emerge, especially in plants. To fill this gap, we generated Ribosome Profiling data from the closely related species Arabidopsis halleri, A. lyrata and A. thaliana and characterized genome-wide patterns of translation across them. Synteny analysis revealed 211 Open Reading Frames (ORFs) that have emerged de novo within the Arabidopsis genus and already exhibit signs of active translation. Most of these de novo translated ORFs were species- and even accession-specific, indicating their transient nature, with patterns of polymorphism consistent with neutral evolution in natural populations. They were also significantly shorter and less expressed than conserved Coding DNA Sequences (CDS), and their GC content increased with phylogenetic conservation. While most of them were located in intergenic regions and are thus newly discovered, 34 were previously annotated as CDS in at least one genome, and are promising putative genes. Our results demonstrate the abundance of translation events outside of conserved CDS, and their role as starting material for the emergence of novel genes in plants. ### Competing Interest Statement The authors have declared no competing interest. Université de Lille, https://ror.org/0546v5182
doi.org
January 20, 2026 at 10:58 AM
Reposted by Claire Patiou, PhD.
@ccasola.bsky.social, V. Luria, @vakirlis.bsky.social & @lizhao.bsky.social discuss advances and open questions in de novo gene emergence and evolution presented at the SMBE Satellite Meeting on De Novo Gene Birth (@official-smbe.bsky.social).

🔗 doi.org/10.1093/gbe/evaf230

#genome #evolution
De Novo Genes: Current Status and Future Goals
Abstract. The recent Society for Molecular Biology and Evolution Satellite Meeting on De Novo Gene Birth, hosted at Texas A&M University on November 6
doi.org
December 29, 2025 at 6:27 PM
Reposted by Claire Patiou, PhD.
📢 Open faculty position – Origins of Life
We have an opening in our section at the University of Geneva! 🧬🚀

SPREAD THE WORD

Apply here: jobs.unige.ch/www/wd_porta...
a woman says " would you like to join us " with her eyes closed
ALT: a woman says " would you like to join us " with her eyes closed
media.tenor.com
January 16, 2026 at 5:49 PM
It was an immense pleasure to be back in Lille and present work from my PhD @popgroup2026.bsky.social , a huge thanks to the organizers! 😁
#PGG59
January 9, 2026 at 10:30 AM
Reposted by Claire Patiou, PhD.
📢 Job alert: Post-Doc Position in the project "Functional annotation of genomic🧬 innovations in a densely populated clade🪰 with deep learning 💻" Join the GEvol community in a collaborative project between @bornberglab.bsky.social and @katharinahoff.bsky.social lab.
👉 bornberglab.org/post-doc-pos...
Post-Doc – bornberglab.org
bornberglab.org
November 26, 2025 at 10:09 AM
Reposted by Claire Patiou, PhD.
Postdoctoral Research Associates are sought for the GEvol project on evolutionary genomics. Candidates should have programming and data analysis skills. More info: https://g-evol.uni-muenster.de/open-positions/ #postdoc
Open Positions – GEvol – DFG SPP 2349
Open Positions – GEvol – DFG SPP 2349
g-evol.uni-muenster.de
December 3, 2025 at 3:32 PM
Reposted by Claire Patiou, PhD.
Reposted by Claire Patiou, PhD.
Time to publish responsibly: DAFNEE, a database of academia-friendly journals in ecology and evolutionary biology url: academic.oup.com/jeb/article/...
Time to publish responsibly: DAFNEE, a database of academia-friendly journals in ecology and evolutionary biology
Abstract. The current economics of scientific publishing reveal a profound imbalance: academia pays prices far exceeding the actual costs of publication. R
academic.oup.com
November 27, 2025 at 12:44 AM
Reposted by Claire Patiou, PhD.
My generation had to deal with datasets where Excel had autocorrected gene names to dates. Future generations are going to have to deal with the hallucinations of slopbots.
August 14, 2025 at 2:03 PM
Reposted by Claire Patiou, PhD.
We wrote the Strain on scientific publishing to highlight the problems of time & trust. With a fantastic group of co-authors, we present The Drain of Scientific Publishing:

a 🧵 1/n

Drain: arxiv.org/abs/2511.04820
Strain: direct.mit.edu/qss/article/...
Oligopoly: direct.mit.edu/qss/article/...
November 11, 2025 at 11:52 AM
Reposted by Claire Patiou, PhD.
🪰 folks! I spoke to the Transmitter about FlyBase. As noted at flybase.org, bridge $ ran out and many staff were laid off.

Good news is stopgap contributions will keep core FlyBase operations active. But community support remains essential. Please donate @FlyBase and share! 1/2

tinyurl.com/FlyBase
FlyBase secures funding for year, but future still uncertain
The FlyBase team’s fundraising efforts have proven successful in the short term, but restoration of its federal grant remains uncertain.
tinyurl.com
October 29, 2025 at 12:31 PM
Reposted by Claire Patiou, PhD.
One of the most exciting works of my career, years in the making. We used high-throughput precision genome editing to test the fitness effects of thousands of natural variants. Our findings challenge the long-held assumption that common variants are inconsequential.

www.biorxiv.org/content/10.1...
Massively parallel interrogation of the fitness of natural variants in ancient signaling pathways reveals pervasive local adaptation
The nature of standing genetic variation remains a central debate in population genetics, with differing perspectives on whether common variants are almost always neutral as suggested by neutral and n...
www.biorxiv.org
October 22, 2025 at 5:46 PM
Reposted by Claire Patiou, PhD.
#PortraitdeScience 👩‍🔬
Découvrez le Portrait de @mariemonniaux.bsky.social, chargée de recherche #EvoEcoPaleo !
Marie Monniaux consacre ses recherches à un phénomène fascinant : l’auto-incompatibilité chez les fleurs🌷

➡️ www.hauts-de-france.cnrs.fr/fr/cnrsinfo/...

👋 @cnrsecologie.bsky.social
September 16, 2025 at 9:00 AM
Reposted by Claire Patiou, PhD.
Check out this cool work from @crouxevo.bsky.social and others, congrats!!! 🥳
Rapid establishment of species barriers in plants compared with that in animals | Science www.science.org/doi/10.1126/...
Rapid establishment of species barriers in plants compared with that in animals
Speciation, the process by which new reproductively isolated species emerge from ancestral populations, results from the gradual accumulation of barriers to gene flow within genomes. To date, the noti...
www.science.org
September 12, 2025 at 7:10 AM
Reposted by Claire Patiou, PhD.
bioRxiv bat signal. We had a huge influx of submissions around Labor Day and now have a backlog. If any affiliates are available to screen, we'd be eternally grateful!
September 4, 2025 at 5:44 PM
Reposted by Claire Patiou, PhD.
Lots of inspiring talks & posters at our GEvol symposium at #ESEB2025 yesterday!
Thanks to everyone who presented, especially our invited speakers @ahuylmans.bsky.social & @rmwaterhouse.bsky.social. From GEvol, Marie Lebherz, Elisa Israel and Barbara Feldmeyer gave talks about their work. (1/2)
August 20, 2025 at 12:32 PM
Reposted by Claire Patiou, PhD.
Erich and Marie travelled to Barcelona for #ESEB2025. Erich gave two talks: one exploring de novo and random proteins, and another discussing gene family losses in slave-maker ants. Marie presented her work on neORF emergence in Drosophila at Symposium 29, organised by @gevol.bsky.social. 🧬🪰🐜
August 25, 2025 at 7:49 AM
Reposted by Claire Patiou, PhD.
This new paper documents a tenfold increase in research papers using community-collected iNaturalist data over just five years: tr.ee/89Ot3I

According to the study, here are four key ways that iNaturalist data directly powers science 🧵⤵️
July 28, 2025 at 4:37 PM
Reposted by Claire Patiou, PhD.
Our new paper in BioScience shows how iNaturalist data is powering research across the globe, with use growing 10x in 5 years and spanning 128 countries & 638 families of life.

Paper: doi.org/10.1093/bios...

@ifas.ufl.edu @inaturalist.bsky.social

#Biodiversity #iNaturalist #OpenScience
July 28, 2025 at 3:41 PM
Reposted by Claire Patiou, PhD.
We are excited to announce the SMBE Fellows Program! ✍️

Designed to provide networking and mentorship opportunities to early-career researchers through scientific writing in evolutionary biology for @molbioevol.bsky.social and @genomebiolevol.bsky.social

📆 Aug. 31

🔗 smbe.org/smbe-fellows-program
July 28, 2025 at 8:53 AM
Reposted by Claire Patiou, PhD.
Yesterday, the NIH R35 “Outstanding Investigator” grant to fund scientists in my lab studying antibiotic resistance was terminated for reasons not related to the content of the science, or any actions taken by me or members of my lab
May 13, 2025 at 11:37 PM
Reposted by Claire Patiou, PhD.
🚨 Another major round of #NSF terminations today 😞. Please report and encourage your colleagues to as well! We need this info to shed light on the damage caused, and to organize and advocate for science that includes and benefits all. airtable.com/appGKlSVeXni... 🧪
🚨Report your NSF grant terminations! 🚨

We are starting to collect information on NSF grant terminations to create a shared resource as we have for NIH. The more information we collect, the more we can organize, advocate, and fight back! Please share widely!

airtable.com/appGKlSVeXni...
April 25, 2025 at 5:54 PM
Reposted by Claire Patiou, PhD.
New Paper Alert! Together with the Parsch lab, we investigated the expression of neORFs (newly evolved expressed open reading frames, identified in a previous study) in Drosophila populations using publicly available RNA-seq data. (1/2)

doi.org/10.1002/jez....
Expression of De Novo Open Reading Frames in Natural Populations of Drosophila melanogaster
We show that newly-evolved, expressed open reading frames (neORFs) identified in a set of inbred Drosophila melanogaster lines are also expressed in multiple tissues and developmental stages of poole...
doi.org
April 22, 2025 at 10:02 AM