DNA Topology Lab
@dnatopologylab.bsky.social
440 followers 210 following 16 posts
DNA Topology Lab @ Department of Biochemistry University of Oxford "We adore chaos because we love to produce order." -M. C. Escher
Posts Media Videos Starter Packs
Reposted by DNA Topology Lab
oxfordbiochemistry.bsky.social
Great news for the Advanced Proteomics Facility based here in Biochemistry @ox.ac.uk ! The Wolfson Foundation is supporting the acquisition of a state-of-the-art mass spectrometer – the first of its kind in the UK – opening up possibilities for breakthroughs in human health ⬇️ bit.ly/202507-apf
£840,000 award from the Wolfson Foundation to enhance Oxford’s proteomics research
State-of-the-art mass spectrometer to be installed at the University’s Advanced Proteomics Facility (APF)
bit.ly
Reposted by DNA Topology Lab
rberrens.bsky.social
Very happy to share our protocols paper for CELLO-seq. This will make single cell long read RNA-seq more accessible and provides analysis guidelines. We hope this helps the #transposon #TEsky community and folks working on #singleCell isoform and allelic #gene expression. doi.org/10.1038/s415...
Long-read RNA sequencing of transposable elements from single cells using CELLO-seq - Nature Protocols
Single-cell long-read RNA sequencing enables the high-fidelity mapping of single-cell expression data from highly sequence-similar transposable elements to unique genomic loci by correcting errors fro...
doi.org
dnatopologylab.bsky.social
The fact that we believe it is true inside us is an extrapolation that may or may not be true. We are trying to find ways to test if chromosomal DNAs do get trapped inside Cohesin rings
dnatopologylab.bsky.social
Very spicy question indeed! All we can say are the following: we can detect sisterDNAs of 2.3 kb plasmids trapped inside Cohesin rings (we call them catenated diners CDs). Every mutation that we know affects cohesion of chromosomes also affects CDs. That is the limit of concrete evidence.
dnatopologylab.bsky.social
Many congratulations Matt!
Reposted by DNA Topology Lab
parasitematt.bsky.social
Honoured to be elected an EMBO member. Looking forward to being part of this wonderful organisation that does so much for European science. Also thanks to Kavli Oxford for always using a picture which makes me look 20 years young. I own you guys!
Reposted by DNA Topology Lab
rhi.bsky.social
Happy birthday, Dad. Time to come back now, it’s all gone a bit rubbish without you. ❤️❤️❤️
Sir Terry Pratchett and his daughter, Rhianna, at the launch of Dodger.
Reposted by DNA Topology Lab
jansenlab.bsky.social
Fresh of the press! rdcu.be/egmY0 We discovered key chromatin modifications that are heritably maintained through mitotic cell divisions in the absence of continued transcription. These hold a memory of past exposure to interferon-gamma, priming cells for future activation of gene expression.
Reposted by DNA Topology Lab
groth-anja.bsky.social
A few days left to apply for exciting PhD and Postdoc opportunities in wonderful Copenhagen and join our efforts in understanding Epigenetic Cell Memory.
grothlab.bsky.social
🚨𝐌𝐚𝐣𝐨𝐫 𝐉𝐨𝐛 𝐀𝐥𝐞𝐫𝐭!🚨The Groth @groth-anja.bsky.social, Mailand, Nilsson @nilssonlab.bsky.social & Krietenstein @nilskrietenstein.bsky.social labs are hiring 𝟔 𝐏𝐡𝐃&𝐩𝐨𝐬𝐭𝐝𝐨𝐜𝐬 to join the new Center for Epigenetic Cell Memory (EpiC) in Copenhagen, Denmark. Apply here: tinyurl.com/yvd93na2 & please share!
6 Postdoctoral and PhD positions in Center for Epigenetic Cell Memory (EpiC)
The Center for Epigenetic Cell Memory (EpiC) is a new Center of Excellence that will be established based on funding by the Danish National Research Foundation.
tinyurl.com
Reposted by DNA Topology Lab
drhonsworth.bsky.social
Very pleased to share our new story on SMC complexes, a great team effort from @roisnehamelinf.bsky.social, @taschner.bsky.social in the GruberLab and James of @dnatopologylab.bsky.social We find that SMC hinge domains are ssDNA gates to facilitate obstacle bypass during DNA loop extrusion!
dnatopologylab.bsky.social
The lab is on 🔥 Tour de force by Hon, Florian and Taschi! Bravo! Privileged to have played a tiny part in this amazing story!
gruberlab.bsky.social
Yet another preprint from the lab—this one is personal. During my PhD, I ended up working on the cohesin SMC hinge, showing its role in sister chromatid cohesion and proposing it as a DNA entry gate in the SMC ring. But the details have remained mysterious and controversial.
Reposted by DNA Topology Lab
gruberlab.bsky.social
Glad to share the work of @yli18smc.bsky.social and co on Lamassu, a bacterial defense system related to Rad50/Mre11 (RM). While RM carefully trims DNA ends for repair, Lamassu chops up the host chromosome. Our study reveals how it is regulated to minimize damage, activating only during infection.
Alt : Structure of the apo Lamassu protein complex. Schematic model of the active LmuA tetramer nuclease (top right). Lamassu icon (top left).
Reposted by DNA Topology Lab
gruberlab.bsky.social
Happy to share the beautiful structure of a Wadjet SMC complex by @roisnehamelinf.bsky.social, with support from the DCI and @drhonsworth.bsky.social ! This is a type II Wadjet with unique characteristics including a tandem KITE subunit, distinct coiled coil architecture and a deviant hinge.
Side view of the structure of a monomer of type II Wadjet.
Reposted by DNA Topology Lab
hyardimci.bsky.social
A new PhD position is available in my lab to explore DNA replication mechanisms using single-molecule approaches. Apply by 19th of March:

www.crick.ac.uk/careers-stud...
Yardimci Lab | Single-molecule visualisation of the eukaryotic replication machinery
www.crick.ac.uk
dnatopologylab.bsky.social
Fantastic opportunity to work with an amazing team in a world class setting. Apply!!
dnatopologylab.bsky.social
Amazing opportunity. Peter is super cool. Apply!
psarkies.bsky.social
Postdoc or PhD working on C. elegans? Interested in applying C. elegans techniques to understand the astonishing world of epigenetics in parasitic nematodes? Apply to our Wellcome Trust funded postdoc position, joint between my lab in Oxford and Mark Viney's in Liverpool:
tinyurl.com/5y6cpvcv
Job Specification
tinyurl.com
Reposted by DNA Topology Lab
kurianlab.bsky.social
*Tenured full Professorship in Genetics and Molecular Cell Biology* at the University Of Cologne, Germany

It's an opportunity to rebuild the place that used to be home to luminaries including Benno Müller-Hill, Max Delbruck, Campos-Ortega, Diethard Tautz Maria Leptin, Thomas Langer
Professorship in genetics and molecular cell biology (W3) (f/m/d) - Academic Positions
The University of Cologne is one of the oldest and largest universities in Germany. With its six Faculties covering a broad spectrum of disciplines and its i...
academicpositions.com
Reposted by DNA Topology Lab
andersshansen.bsky.social
Excited to share James Jusuf's preprint:

By integrating Micro-C with SuperRes Live-Imaging we can calibrate genomics&imaging to perform absolute quantification of looping (e.g. this loop is present 3%)

We quantify mESC 36k loops: are generally rare (2.3%)

www.biorxiv.org/content/10.1...
dnatopologylab.bsky.social
Are you kidding me! I look at a massive tank of liquid nitrogen every day!
Reposted by DNA Topology Lab
kazu-maeshima.bsky.social
Our new review on how the #chromatin domain is formed in the cell is now available @Curr Opin Struct Biol.📄✨
We critically discuss the domain formation mechanism from a physical perspective, including #phase-separation and #condensation.
📥 Free-download link:
authors.elsevier.com/a/1keGn,LqAr...