Matthieu Chavent
@matthchavent.bsky.social
570 followers 470 following 61 posts
Multiscale molecular dynamics, biological membranes interactions, CNRS researcher, group leader at @cbitoulouse.bsky.social
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matthchavent.bsky.social
🔬 MD community call! 🧪

Join us for the “Learn • Connect • Innovate” Co-Designing Workshop Series, part of the @lumen-eu.bsky.social project to shape the future of open science tools, workflows, and collaboration across disciplines.

lumenproject.eu/learn-connec...
Reposted by Matthieu Chavent
embo.org
EMBO @embo.org · 1d
Learn all things #cytoskeleton #research in an interdisciplinary environment at EMBO Workshop "Structure and Function of the Cytoskeleton" in Paris, FR, 7–10 April 2026.

Deadline: 20 December 2025

https://meetings.embo.org/event/26-cytoskeleton
#EMBOCytoskeletalFunction #EMBOevents #conference 🧪
Structure and Function of the Cytoskeleton
The cytoskeleton, a dynamic and intricate network of protein filaments, is found within the cytoplasm of all cells, from bacteria and archaea to complex eukaryotes. This essential cellular component …
meetings.embo.org
Reposted by Matthieu Chavent
asrose.bsky.social
#molstar now supports immersive AR/VR - enjoy

molstar.org/xr/
Reposted by Matthieu Chavent
lindorfflarsen.bsky.social
Integrative modelling of biomolecular dynamics

Time-dependent and -resolved experiments combined with computation provide a view on molecular dynamics beyond that available from static, ensemble-averaged experiments

Review w @dariagusew.bsky.social & Carl G Henning Hansen
doi.org/10.48550/arX...
Figure 1 from the review. Caption: Comparison of a schematic example showing static, time-dependent, and time-resolved experiments illustrated by a protein folding process. (a) A static experiment measuring the observable O$_{\text{exp}}$ is shown, which can be modelled as a distribution of simulated values, O$_{\text{calc}}$, representing a conformational ensemble of folded and unfolded states. (b) Shows a time-dependent experiment, where the equilibrium dynamics of reversible folding gives rise to measured transition times $\tau_1$ and $\tau_2$. These can be modelled as equilibrium dynamics, illustrated by a free energy (FE) surface along a chosen degree of freedom (D.O.F.) (c) A time-resolved experiment probes a non-equilibrium process, where the system begins at $t_{0}$ in the folded state. During the observation time $t$ the protein unfolds until $t_{\text{max}}$. At each time point, a distinct ensemble average, O$_{\text{exp}}$, can be observed, reflecting the proteins changing structure. This evolution can be modelled as distributions of O$_{\text{calc}}$ at each time point. These are shown together with a FE surface.
Reposted by Matthieu Chavent
franknoe.bsky.social
Join our BioEmu project @msftresearch.bsky.social AI for Science. In Berlin DE or Cambridge UK:

aka.ms/bioemu-ml - #MachineLearning Researcher
aka.ms/bioemu-data - Data Engineer
aka.ms/bioemu-applied - Applied Researcher
aka.ms/bioemu-principal - Principal Applied Researcher
Search Jobs | Microsoft Careers
aka.ms
Reposted by Matthieu Chavent
sacquin-mo.bsky.social
The students of the Computational Biology M.Sc. of Paris-Saclay (AMI2B) organize the Junior Conference on Computational Biology (JC2B) that will be held on November 13, 2025 at I2BC CNRS, Gif-sur-Yvette.
The call for contributions is open until October 20 2025:
bioi2.i2bc.paris-saclay.fr/jc2b/
JC2B 2025 - Junior Conference of Computational Biology
Junior Conference of Computational Biology - Conference for young researchers in bioinformatics
bioi2.i2bc.paris-saclay.fr
Reposted by Matthieu Chavent
franknoe.bsky.social
Postdoc position available in the BioEmu team at @msftresearch.bsky.social AI for Science - Berlin DE or Cambridge UK. Looking for candidates with backgrounds in #MachineLearning #AI Biophysics or Bioinformatics

jobs.careers.microsoft.com/global/en/jo...
Reposted by Matthieu Chavent
shyamalm.bsky.social
Ever wondered how to position organelles in bacteria? Wonder no more!
Happy to have contributed to this fantastic story from @cellforganized.bsky.social' lab.

The avenues this opens in the synthetic biology space are enormous!

Movie: Carboxysomes positioned in E. coli!

Preprint: shorturl.at/D6xVg
Reposted by Matthieu Chavent
fairmat.bsky.social
A great feature in @science.org on the recent LLM Hackathon in Berlin highlights how coding, collaboration, and FAIR data go hand in hand for accelerating materials discovery.

Read more in the article by Zack Savitsky ⬇️
www.science.org/content/arti...
Researchers customize AI tools at global ‘hackathon’
More than 1200 scientists and developers explore how large language models can be applied to materials science and chemistry
www.science.org
Reposted by Matthieu Chavent
cyrilpedia.bsky.social
'At the Scripps Research Institute, (...) we created the Computational Biology and Bioinformatics (CBB) affinity group, a trainee-led community for the discussion of computational biology/bioinformatics with the goal of facilitating knowledge exchange.'
Catalyzing computational biology research at an academic institute through an interest network
Author summary Scientists have widely adopted computing in their research, and the relative importance of computational methods in biology continues to increase. However, a persistent gap exists betwe...
journals.plos.org
Reposted by Matthieu Chavent
weria-lab.bsky.social
A new preprint from my group by my PhD student Adria:
No attraction between proteins, they do not induce curvature, but they cluster on membranes.
One of the reasons why mesoscale modeling matters.
www.biorxiv.org/content/10.1...
Reposted by Matthieu Chavent
lindorfflarsen.bsky.social
New review on computational design of intrinsically disordered proteins 🖥️🍝 by @giuliotesei.bsky.social @fpesce.bsky.social & 👴

doi.org/10.48550/arX...
Figure 3 from the paper with the caption: "Role of machine learning in de novo design of IDRs. (A) Machine-learning models can be trained on diverse data sources, from molecular dynamics simulations to annotations of cellular localization and protein structures from the Protein Data Bank. (B) Often implemented as neural networks using sequence-encoded features as input, these models can initially be trained on a limited region of sequence space as surrogate models. Through active learning, additional simulations are performed during the design campaign to generate new data, and the surrogate model is retrained on the expanded dataset to progressively improve its accuracy. (C) Machine-learning models have been developed to predict biophysical observables, biological annotations, and protein structures. When combined, machine-learning models can be used to identify a set of sequences that strike a trade-off between multiple design objectives, defining a Pareto front."
Reposted by Matthieu Chavent
elife.bsky.social
Stability vs flexibility: reshaping archaeal membranes in silico

This ‘fundamental’ study characterises the mechanics and stability of bolalipids from archaeal membranes using a minimalist, physics-based computational model.
buff.ly/jCnRfkO
matthchavent.bsky.social
🔬 MD community call! 🧪

Join us for the “Learn • Connect • Innovate” Co-Designing Workshop Series, part of the @lumen-eu.bsky.social project to shape the future of open science tools, workflows, and collaboration across disciplines.

lumenproject.eu/learn-connec...
Reposted by Matthieu Chavent
livecomsjournal.bsky.social
The latest @livecomsjournal.bsky.social tutorial "Molecular Dynamics: From Basics to Application" by Vollmers, Chen et al is out now! doi.org/10.33011/liv...

It includes comprehensive MD tutorials in GROMACS, covering forcefields, thermodynamic ensembles, long-range electrostatics and much more!
Reposted by Matthieu Chavent
nadlerlab.bsky.social
This is an really amazing opportunity. If you get it, you can essentially pick you institute. The package really is rather competitive.
maxplanck.de
Springboard for an international scientific career! 🧬🧪🔭⚛️🧠🌱 Call for #MaxPlanckResearchGroups launched; applications are possible until October 14, 2025 www.mpg.de/max-planck-r... #ScienceCareer
Call for Applications / Ausschreibung
Reposted by Matthieu Chavent
biomemphys.bsky.social
We're hiring! Join our team at @fau.de ! We are seeking an enthusiastic candidate for a PhD position in our lab specializing in cutting-edge theoretical and computational membrane biophysics.
Please send your CV, and a statement of research interests via email.
www.biomemphys.nat.fau.de/jobs/
Reposted by Matthieu Chavent
science.org
The endoplasmic reticulum donates lipids through a tunnel-like protein to help lysosomes expand.

Learn more in a new #SciencePerspective: https://scim.ag/45GWQrS
A protein tunnel helps stressed lysosomes swell
The endoplasmic reticulum donates lipids through a tunnel-like protein to help lysosomes expand
scim.ag
Reposted by Matthieu Chavent
compbiophys.bsky.social
📢 We are hiring #PhD students and #Postdocs at the
@mpi-nat.bsky.social in
in the Department of Theoretical and Computational #Biophysics in Göttingen 🇩🇪! 🔗 check our current job adverts at www.mpinat.mpg.de/grubmueller and find your project. Submit your #application today! #job
Helmut Grubmüller
www.mpinat.mpg.de
Reposted by Matthieu Chavent
martinpacesa.bsky.social
Exciting to see our protein binder design pipeline BindCraft published in its final form in @Nature ! This has been an amazing collaborative effort with Lennart, Christian, @sokrypton.org, Bruno and many other amazing lab members and collaborators.

www.nature.com/articles/s41...
Reposted by Matthieu Chavent
carolynbertozzi.bskyverified.social
Spread the word - we at @stanford-chemh.bsky.social are searching to fill a new junior faculty at the interface of molecular and computational science. See link below!
stanford-chemh.bsky.social
Open faculty position!
We're seeking applicants for a tenure-track faculty position at the junior level (Assistant or untenured Associate Professor) with research programs that exist at the interface between molecular science and computation. Apply here: stanford.io/45MF3Qa
Open Faculty Position: Assistant or Associate (Untenured) Professor 

Application deadline: 11:55 PM on Wednesday, October 15, 2025

Sarafan ChEM-H is seeking candidates with research programs that exist at the interface between molecular science and computation.  

Click the link above to learn more & apply!
Reposted by Matthieu Chavent
elife.bsky.social
27 simulations of capturing hundreds of lipid scrambling events reveal mechanisms of lipid translocation.

However, according to reviewers, more evidence is needed on outside-the-groove scramblase activity.
buff.ly/sVdXMyM