Salah Elias
@theeliaslab.bsky.social
1.5K followers 980 following 29 posts
🇩🇿 🇫🇷 cell & developmental biologist associate professor at @unisouthampton.bsky.social stem cells, cell division, cell polarity, mammary organogenesis, breast cancer and microscopy
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Reposted by Salah Elias
caoresco.bsky.social
Are you looking for a reliable strategy to quantify the architecture of mammary tissue using whole mount images?? Well, maybe you should check MaGNet, our new computational based and user friendly approach (and you probably can adapt it to other organs as well). link.springer.com/article/10.1...
MaGNet: A Network-Based Method for Quantitative Analysis of the Mammary Ductal Tree in Developing Female Mice - Journal of Mammary Gland Biology and Neoplasia
The mammary gland is a uniquely dynamic organ with a branching architecture that develops entirely after birth in response to hormonal cues. A common approach in mammary gland biology is the evaluation of branching morphogenesis to characterize the role of developmental, physiological and molecular perturbations on branching tissue invasion, growth, and maintenance. Yet, the field still lacks a fully open-sourced, quantitative framework to analyze whole-mount mammary tissue images, as a commonly utilized methodology. Here, we present MaGNet (Mammary Gland Network analysis tool), a method that leverages network theory to characterize key features of ductal branching during mammary gland development. Applying this pipeline to mammary gland images captured at three pubertal timepoints, we achieved reproducible quantification of ductal tree expansion across development. In addition, this network analysis pipeline captures ductal expansion induced by pregnancy hormones. By providing open-source tools to the research community, this method may increase reproducibility and broad applicability across diverse organ systems, model organisms, and developmental stages.
link.springer.com
theeliaslab.bsky.social
CenSegNet is fast, generalisable, and open-source—built for biologists and pathologists.

A fantastic collaboration across
@unisouthampton.bsky.social & @cam.ac.uk

#theeliaslab @sotonbiosciences.bsky.social

3/3
theeliaslab.bsky.social
Using human breast cancer TMAs, CenSegNet uncovers how structural and numerical centrosome abnormalities are patterned across tumour regions, revealing their mechanistic uncoupling and links to tumour progression and heterogeneity, hormone status, and age.

2/3
Reposted by Salah Elias
katemiro.bsky.social
Pathologists have used nuclear & tissue shapes to diagnose #cancer for decades, but what is the molecular basis for this? In our latest work, we develop a computational pipeline to figure this out in #colorectalcancer! Check out 🧵& preprint #mechanobiology #stemcells www.biorxiv.org/content/10.1...
Reposted by Salah Elias
plosbiology.org
The #PrimaryCilium dynamically assembles & disassembles, but how is this controlled? @cytolabkoc.bsky.social shows that #ciliopathy linked protein Ccdc66 regulates both #cilium stability & length in epithelial cells via microtubules, actin & vesicular trafficking @plosbiology.org 🧪 plos.io/4mdTS4A
Model for cellular functions and mechanisms of CCDC66. CCDC66 is a microtubule-stabilizing protein that maintains cilium integrity and size and facilitates vesicular transport at the ciliary base. Depletion of CCDC66 results in variations in cilia size due to compromised axonemal integrity, intraflagellar transport, and increased ectocytosis events involving the release of vesicles and fragments. CCDC66 may also support ciliary ectocytosis and length stability by regulating the actin cytoskeleton. Furthermore, disruptions in both microtubule stability and the actin cytoskeleton impair RAB11 and RAB5-mediated endocytosis and membrane recycling, affecting cell adhesion and the targeting of ciliary receptors. This disruption subsequently activates protein degradation pathways through RAB7-regulated late endocytosis, potentially involving RAB7 translocation to cilia to support ectocytosis. Collectively, these defects in protein transport, cilia function, and cell contacts contribute to compromised epithelial tissue integrity and multilumen formation in kidney tubules.
Reposted by Salah Elias
fnobrega.bsky.social
Thrilled to see our Kiwa story out today! A membrane-associated supercomplex that senses infection and blocks replication and transcription.

www.cell.com/cell/fulltex...

Huge congratulations to Yi and Zhiying for bringing it home, to Thomas for starting us off, and to all the collaborators.
Kiwa is a membrane-embedded defense supercomplex activated at phage attachment sites
Zhang, Todeschini, and Wu et al. show that the bacterial defense system Kiwa senses phage attachment at the membrane and assembles a transmembrane complex that halts infection by blocking phage DNA re...
www.cell.com
theeliaslab.bsky.social
A short break from paper writing, with family
Reposted by Salah Elias
vmetzis.bsky.social
Interested in developmental epigenetics? So are we! Apply now to join us for your postdoc!

Multiple positions across multiple groups @mrc-lms.bsky.social

Projects spanning germline demethylation, gene regulation, genome architecture in development & disease 👇👇

lms.mrc.ac.uk/work/vacanci...
MRC Postdoctoral Research Scientists x 5 - MRC Laboratory of Medical Sciences
Applications are now open for up to five postdoctoral positions in the area of developmental epigenetics.
lms.mrc.ac.uk
Reposted by Salah Elias
kamounlab.bsky.social
I just published: Why I’m skipping the Congress this year (And why you should still publish your posters)

Publishing your poster creates a citable record and protects you from bad actors.

#ISMPMI2025 #OpenMPMI #AcademicChatter #PhDchat

medium.com/p/why-im-ski...
Why I’m skipping the Congress this year (And why you should still publish your posters)
Publishing your poster creates a verifiable and citable record of your work. It also protects you from bad actors — the evidence will be…
medium.com
Reposted by Salah Elias
richardsever.bsky.social
“Want to know which papers are flawed…the ones that don’t get preprinted”

Not the first time I’ve heard people say this.
kamounlab.bsky.social
I just published: Why I’m skipping the Congress this year (And why you should still publish your posters)

Publishing your poster creates a citable record and protects you from bad actors.

#ISMPMI2025 #OpenMPMI #AcademicChatter #PhDchat

medium.com/p/why-im-ski...
Why I’m skipping the Congress this year (And why you should still publish your posters)
Publishing your poster creates a verifiable and citable record of your work. It also protects you from bad actors — the evidence will be…
medium.com
Reposted by Salah Elias
rashmi-priya.bsky.social
This was a fun exercise... reflecting on my accidental path into science, the questions that drive our lab @crick.ac.uk , and thoughts on building a more inclusive scientific community. Grateful for the opportunity @focalplane.bsky.social and Subhajit .
focalplane.bsky.social
New post from 2024 #FocalPlaneCorrespondent @sdutta.bsky.social

Subhajit talks to @rashmi-priya.bsky.social about her unconventional journey into science, her fascination with organ morphogenesis & her dedication to fostering interdisciplinary collaboration.
An Interview with Dr. Rashmi Priya - FocalPlane
An Interview with Dr. Rashmi Priya - Asian Microscopists and Cell Biologists
focalplane.biologists.com
Reposted by Salah Elias
robinjournot.bsky.social
🧵Just out !
We reveal how 4 branched epithelia—mammary, lacrimal, salivary & prostate—use a conserved YAP–Notch–p63 circuit to self-organize during development & regeneration.
Here’s the story👇
authors.elsevier.com/c/1lM285Sx5g...
Work done in @frelab.bsky.social at ‪
@institutcurie.bsky.social
Reposted by Salah Elias
kamounlab.bsky.social
I just published: Mountains can meet: farming the desert with microbes, not fertilizers

In the harsh deserts of Southern Algeria, Nadjette Djemouai is uncovering the power of native microbes to support sustainable agriculture.

@getgenome.bsky.social 🇩🇿

kamounlab.medium.com/mountains-ca...
Reposted by Salah Elias
Reposted by Salah Elias
getgenome.bsky.social
Thank you Fatma @Sakhri23 for your expert organisation and for being such a graceful host 🙏