Matthieu Chavent
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matthchavent.bsky.social
Matthieu Chavent
@matthchavent.bsky.social
Multiscale molecular dynamics, biological membranes interactions, CNRS researcher, group leader at @cbitoulouse.bsky.social
Pinned
Happy that simulations, performed by Gabriel Diaz, stellar master student in the team, helped to decipher how PIP2 lipids help recruiting Munc13 protein to prime synaptic vesicle Collaborative work led by F. Pincet @normalesup.bsky.social

full story at @pnas.org : www.pnas.org/doi/10.1073/...
Really happy to participate to the @lumen-eu.bsky.social project. Here a first glimpse on how to link the different scientific communities (Molecular Dynamics, Mathematics, Hearth Science, and Humanities) through the LUMEN Data Mesh.
🎥 introducing the LUMEN Data Mesh! Watch our new video to understand the core architectural ideas behind LUMEN: www.youtube.com/watch?v=AoXD...
The LUMEN Data Mesh
YouTube video by LUMEN Project
www.youtube.com
February 18, 2026 at 10:08 AM
Reposted by Matthieu Chavent
PhD positions in my lab (AI for Science), but with special preference for people who complement our current activities or are enthusiastic about contributing to our on going work. Looking for technically strong, independent and proactive candidates. www.chalmers.se/en/about-cha...
Vacancies
www.chalmers.se
February 14, 2026 at 4:44 PM
Reposted by Matthieu Chavent
Check out our latest paper on the glycine receptor with
@chakrapanilab.bsky.social

where we show the interplay between the orthosteric and allosteric binding sites.

www.science.org/doi/10.1126/...
Structural basis for domain coupling in heteromeric glycine receptors revealed by an atypical allosteric agonist
Counteracting ligands stabilize glycine receptor states revealing mechanisms of pentameric ligand-gated channel allostery.
www.science.org
February 14, 2026 at 8:24 AM
Reposted by Matthieu Chavent
New preprint: “When lipids embrace RNA”

www.biorxiv.org/content/10.6...

Using multiscale simulations (🍸 #Martini + constant-pH MD), we show that:

• Local pKa ≠ global pKa
• Endosomal escape is limited by persistent protonation.

#LNP #MolecularDynamics
February 13, 2026 at 8:32 PM
Reposted by Matthieu Chavent
Our paper about Bentopy is now published in Protein Science!

Bentopy makes assembling large-scale MD models accessible and fast.

doi.org/10.1002/pro....

@janstevens.bsky.social, @cg-martini.bsky.social
February 13, 2026 at 3:07 PM
Reposted by Matthieu Chavent
Our paper on [Bentopy](doi.org/10.1002/pro....) is out in Protein Science! We developed Bentopy to make assembling large-scale MD models more accessible, building on what we learned from trying to simulate whole-cell models. Here's our updated Martini JCVI-syn3A cell model👇
February 13, 2026 at 3:37 PM
Reposted by Matthieu Chavent
Beautiful and extensive work from the @carobarisch.bsky.social and @soldatilab.bsky.social labs demonstrating that nutrient utilization in intracellular mycobacteria is dependent on their intracellular location.

Visionary work!!

www.biorxiv.org/content/10.6...
www.biorxiv.org
February 12, 2026 at 6:46 PM
Happy that simulations, performed by Gabriel Diaz, stellar master student in the team, helped to decipher how PIP2 lipids help recruiting Munc13 protein to prime synaptic vesicle Collaborative work led by F. Pincet @normalesup.bsky.social

full story at @pnas.org : www.pnas.org/doi/10.1073/...
February 12, 2026 at 9:08 AM
Reposted by Matthieu Chavent
Lipids challenge ligands to control receptors

The behaviour of a receptor protein can be influenced by the presence of certain lipids in the membrane it is embedded in.

🔗 buff.ly/G1Zl6cZ
February 6, 2026 at 2:59 PM
Reposted by Matthieu Chavent
Excited to share the upcoming CECAM workshop: “Accessibility, Inclusivity & Visibility in Computational Chemistry”!

📅 Apr 22–24, 2026
📍 Lyon (hybrid)
💸 Free registratration: deadline Mar 31

Join us to discuss how to make #Compchem more inclusive & accessible. Contributed talks welcome!
CECAM - Accessibility, Inclusivity and Visibility in Computational Chemistry
www.cecam.org
February 3, 2026 at 8:19 AM
Reposted by Matthieu Chavent
How do lipids shape life? I explore this question in my recent talk for the Build-a-Cell 🦠 seminar series. Thanks to @kateadamala.bsky.social for hosting! Watch it here: youtu.be/JnF7hPCiSbI?...
Build-a-Cell seminar James Saenz: Harnessing minimal cells to understand the living membranes
YouTube video by Build-a-Cell
youtu.be
July 8, 2025 at 8:01 AM
Reposted by Matthieu Chavent
Please share!!! I am looking for a postdoctoral researcher to join us. Focus will be on exciting collaborative projects on lipids and membrane biology, pushing the boundaries of in silico "reconstitutions". Previous experience with molecular dynamics simulations of biological systems a strong plus!
January 30, 2026 at 9:48 AM
Reposted by Matthieu Chavent
This project is joint with fab computational biologist @mattbashton.bsky.social - great opportunity to learn computational and molecular biology skills
January 24, 2026 at 3:09 PM
Reposted by Matthieu Chavent
Go #TeamTomo! 🧪 @wilflinglab.bsky.social & @nanigrotjahn.bsky.social are on a roll! Beautiful in-cell visualization of lysosome rupture 🎈💥
LLOMe has long been used to study lysosomal damage, yet how it works has remained a mystery.
Using cryo-electron tomography, we show it forms amyloid structures inside lysosomes that mechanically rupture membranes – revealing a new paradigm for lysosomal failure.

🔗 doi.org/10.64898/202...

#CryoET
January 20, 2026 at 8:36 PM
Reposted by Matthieu Chavent
Have you registered yet? Early bird registration and abstract submission are open until January 31.
mosbacher-kolloquium.org
January 5, 2026 at 3:14 PM
Reposted by Matthieu Chavent
Got meself a wee project which took up my whole evening, I think people call this kind of thing a "timeline cleanse"?
January 14, 2026 at 11:45 PM
Reposted by Matthieu Chavent
📢 New preprint alert!
How do proteins enter mitochondria? We uncovered a surprising mechanism at the mitochondrial entry gate—using #NMR, in vivo single-particle tracking, yeast experiments, and MD simulations to crack the code.
www.biorxiv.org/content/10.6...
#StructuralBiology #Mitochondria
🧵 1/8
A dynamic displacement mechanism drives protein import into mitochondria
Most mitochondrial proteins are produced in the cytosol and imported through the translocase of the outer mitochondrial membrane (TOM) to reach their final destination. Although this protein entry gat...
www.biorxiv.org
January 14, 2026 at 7:16 PM
Reposted by Matthieu Chavent
OpenBind is a new open science effort to dramatically increase the number of protein:ligand structures in the PDB, pairing this with high-quality affinity data to enable a new generation of predictive structure and affinity models for drug discovery. Check it out: openbind.ai
January 12, 2026 at 2:54 PM
Reposted by Matthieu Chavent
🧐”Study reveals how #tuberculosis exploits immune defenses to promote infection.”
🔗to study published in Science Immunology ⬇️
Mycobacterial α-glucans hijack dectin-1 to facilitate intracellular bacterial survival
www.science.org/doi/10.1126/...
January 11, 2026 at 3:49 PM
Reposted by Matthieu Chavent
Experimental tour-de-force from Anne-Claude Gavin's lab: selectivity mapping of 39 lipid transfer proteins reveals ~500 new LTP-lipid pairs. Molecular modeling by @mahmoudmoqadam.bsky.social, @rezatalandahti.bsky.social & Florian Echelard. @cbubergen.bsky.social
www.nature.com/articles/s41...
Client Challenge
www.nature.com
January 9, 2026 at 8:02 AM
Reposted by Matthieu Chavent
First article of 2026! Happy to have our first real foray into carbohydrates out in J Phys Chem B. Excellent work by PhD candidate Esmat Mohammadi.

pubs.acs.org/doi/full/10....
Insights into the Electronic and Structural Properties of Cellulose and Amylose: A Comparative Force Field Study
Amylose and cellulose are important biopolymers with diverse applications in biotechnology and materials science. Understanding their structural, dynamic, and solvation properties at the molecular level is critical for harnessing their potential. This study investigates the electronic and structural properties of single-chain cellulose and single- and double-chain amylose in aqueous solution using molecular dynamics simulations with both nonpolarizable (CHARMM) and polarizable (Drude) force fields. CHARMM simulations show stable hydrogen bonding between amylose and water, higher glucose ring dipole moments, increased rigidity, adoption of chair conformations, and less variation in dihedral angles. In contrast, Drude simulations captured dynamic electronic polarization, enhanced conformational flexibility, and resulted in heterogeneous inter- and intramolecular hydrogen bonds. For cellulose, structural and solvation behaviors were largely similar between CHARMM and Drude. These findings highlight molecular interactions and solvation dynamics of amylose and cellulose, with potential relevance in materials science and biotechnology.
pubs.acs.org
January 6, 2026 at 8:14 PM
Reposted by Matthieu Chavent
Sebinelli, Syska, Razmazma et al. @umontpellier.bsky.social show that the yeast protein Ist2, which localizes to ER–PM contact sites, possesses a #phospholipid scramblase activity in its ER-localized transmembrane domain that is important for several ER-related processes. rupress.org/jcb/article/...
January 5, 2026 at 8:45 PM
Reposted by Matthieu Chavent
🚨Excellent editorial in ACS Central Sci 📣

Thank you @carolynbertozzi.bskyverified.social for your support and to @louisflwilson.bsky.social for spotting these mistakes + drafting an excellent manuscript

#CryoEM #StructuralBiology
#vidalized

ACS Central Science pubs.acs.org/doi/full/10....
Pitfalls in the Modeling of Maltoside Detergents in Protein Structures
This publication is Open Access under the license indicated. Learn More
pubs.acs.org
January 5, 2026 at 1:40 PM
Reposted by Matthieu Chavent
Happy new year! I've so enjoyed the end-of-year lists of people's favorite papers from 2025, so I made a list of 16 #lipidtime studies from 2025 that I found interesting. Here they are in no particular order (please add more if you would like!), and here's to much more exciting science in 2026! 🧪
January 5, 2026 at 2:48 PM