Ben Sabari
@bsabari.bsky.social
1.2K followers 140 following 20 posts
Assistant Professor at UTSW studying nuclear organization by nuclear condensates
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bsabari.bsky.social
I am excited to share the latest paper from my lab where we leverage the selection bias of condensate-promoting oncofusions to uncover molecular rules governing condensate specificity and function. www.cell.com/cell/fulltex....
bsabari.bsky.social
Congratulations! Well deserved!
Reposted by Ben Sabari
alexholehouse.bsky.social
Last week, Washington University made the perhaps questionable decision to award me tenure.
Lab picture of Holehouse lab members past and present
Reposted by Ben Sabari
shrinivaslab.bsky.social
Preprint!

Inspired by condensates that form on specific DNA, we ask:

can we design multicomponent fluids to form distinct condensates on diff. surfaces?

i.e. perform classification by condensation ⚛️ 💻 exploiting phase transitions beyond compartmentalization!
arxiv.org/abs/2509.08100
(1/2)
Reposted by Ben Sabari
gbmev.bsky.social
Congratulations to the Fritz Lipmann Lecturer Michael Rosen (Dallas) by the GBM president Harald Kolmar.
Reposted by Ben Sabari
xuzhoulab.bsky.social
Beyond excited to share our #NewPaper in @cellcellpress.bsky.social! Inflamed environments acidify intracellular #pH. BRD4 senses this via transcriptional condensates, tuning #macrophage responses to match demand and consequences of #inflammation authors.elsevier.com/sd/article/S...
Reposted by Ben Sabari
christinemayr.bsky.social
New paper:
More than 2700 human 3′UTRs are highly conserved. These 3′UTRs are essential components in mRNA templates, as their deletion decreases protein activity without changing protein abundance. Highly conserved 3′UTRs help the folding of proteins with long IDRs.

www.biorxiv.org/content/10.1...
mRNA 3′UTRs chaperone intrinsically disordered regions to control protein activity
More than 2,700 human mRNA 3′UTRs have hundreds of highly conserved (HC) nucleotides, but their biological roles are unclear. Here, we show that mRNAs with HC 3′UTRs mostly encode proteins with long intrinsically disordered regions (IDRs), including MYC, UTX, and JMJD3. These proteins are only fully active when translated from mRNA templates that include their 3′UTRs, raising the possibility of functional interactions between 3′UTRs and IDRs. Rather than affecting protein abundance or localization, we find that HC 3′UTRs control transcriptional or histone demethylase activity through co-translationally determined protein oligomerization states that are kinetically stable. 3′UTR-dependent changes in protein folding require mRNA-IDR interactions, suggesting that mRNAs act as IDR chaperones. These mRNAs are multivalent, a biophysical RNA feature that enables their translation in network-like condensates, which provide favorable folding environments for proteins with long IDRs. These data indicate that the coding sequence is insufficient for the biogenesis of biologically active conformations of IDR-containing proteins and that RNA can catalyze protein folding. ### Competing Interest Statement The authors have declared no competing interest. Pershing Square Foundation, https://ror.org/04tce9s05 G. Harold & Leila Y. Mathers Foundation National Institutes of Health, DP1GM123454, R35GM144046 Memorial Sloan Kettering Cancer Center, https://ror.org/02yrq0923, P30 CA008748
www.biorxiv.org
Reposted by Ben Sabari
evgenykvon.bsky.social
Our paper describing the Range Extender element which is required and sufficient for long-range enhancer activation at the Shh locus is now available at @nature.com. Congrats to @gracebower.bsky.social who led the study. Below is a brief summary of the main findings www.nature.com/articles/s41... 1/
Range extender mediates long-distance enhancer activity - Nature
The REX element is associated with long-range enhancer–promoter interactions.
www.nature.com
Reposted by Ben Sabari
kallikappel.bsky.social
In the nucleus, many intrinsically disordered proteins (IDPs) form condensates. What IDP sequence features drive this behavior? We developed CondenSeq, a high-throughput approach to measure nuclear condensate formation, and applied it to ~14,000 IDPs to find out!

rdcu.be/eq975
Characterizing protein sequence determinants of nuclear condensates by high-throughput pooled imaging with CondenSeq
Nature Methods - CondenSeq is an imaging-based, high-throughput platform for characterizing condensate formation within the nuclear environment, uncovering the protein sequence features that...
rdcu.be
Reposted by Ben Sabari
tanjamittag.bsky.social
Are stress granules crucibles or protective against amyloid fibril formation? Read about our work at Mol Cell: "Tunable metastability of condensates reconciles their dual roles in amyloid fibril formation". Wonderful collaboration with @rohitpappu68.bsky.social and other colleagues (see next post)!
Reposted by Ben Sabari
heankel.bsky.social
Happy to be back for graduation! Thankful for my mentor @bsabari.bsky.social , @utswtxid.bsky.social and family/friends who were there last night! 🙏🏼
Reposted by Ben Sabari
alexholehouse.bsky.social
Now published! Big congrats to first author @gginell.bsky.social

We are actively working improving/updating various aspects of FINCHES; don't hesitate to reach out if you run into issues, have questions.
www.science.org/doi/10.1126/...
Reposted by Ben Sabari
fukayalab.bsky.social
Delighted to share a new preprint from the lab!

We identified zinc-finger associated domain (ZAD)-containing C2H2 zinc-finger proteins (ZAD-ZnFs) as insulator-binding proteins in Drosophila.
www.biorxiv.org/content/10.1...
Reposted by Ben Sabari
philipcball.bsky.social
Some fabulous talks today at the meeting on biomolecular condensates at the Carlsberg Academy in Copenhagen. I particularly enjoyed the presentation by Julie Forman-Kay of Univ. Toronto, who explained that the specificity of function and interaction in proteins with intrinsically disordered... /1
Reposted by Ben Sabari
nitmb.bsky.social
Join us for this week’s entry in the NITMB Seminar Series!

Featuring Krishna Shrinivas (@shrinivaslab.bsky.social), Assistant Professor of Chemical and Biological Engineering at Northwestern University

Learn more at www.nitmb.org/nitmb-semina...