Gytis Dudas
banner
evogytis.bsky.social
Gytis Dudas
@evogytis.bsky.social
PI @ Vilnius University Life Sciences Center 🦠🧬🌳🌍🐾📈.
Enthusiast of orthomyxos (& other (-)ssRNA viruses), RNA virus discovery, evolution & ecology, genomic epidemiology, data-vis, matplotlib.
EMBO installation grantee.
evogytis.github.io
Pinned
This is quite late but our lab has a preprint out about a SARS-CoV-2 situation we had in mink in Lithuania back in 2021. It's a doozy with re-emergence of extinct lineages, a country-wide test of all mink farms in Lithuania & some interesting dynamics in mink. www.medrxiv.org/content/10.1... 1/5🧵
Reposted by Gytis Dudas
Influenza remains an important cause of illness and death. In a phase 3 trial, a nucleoside-modified mRNA (modRNA) quadrivalent vaccine was found to be superior to a standard quadrivalent vaccine in preventing influenza illness. Full trial results: nej.md/43udoTG

#MedSky #IDSky
November 19, 2025 at 10:40 PM
Reposted by Gytis Dudas
It doesn’t matter how much you exercise or how many veggies you eat when it comes to a pandemic.

These things will not stop it, and the shitbirds that Trump has installed in leading public health positions should be fired for even suggesting it would.
RFK Jr.’s Miasma Theory of Health Is Spreading
The NIH is picking up Robert F. Kennedy Jr.’s argument that a healthy immune system can keep even pandemic germs at bay.
www.theatlantic.com
November 19, 2025 at 11:03 PM
Reposted by Gytis Dudas
In Central America, scientists found a spike in malaria cases after the fungus arrived. As frogs died, there were fewer tadpoles to eat mosquito larvae; more mosquitoes resulted in a fivefold increase in malaria cases: wapo.st/3LHtdAj (gift). We allow extinctions at our peril. 🌎
First, the frogs died. Then people got sick.
An emerging area of research is uncovering hidden links between nature and human health.
wapo.st
November 16, 2025 at 2:36 AM
Reposted by Gytis Dudas
Guess the news is officially out! Extremely excited to announce that I will be starting my own laboratory at Institut Pasteur @pasteur.fr this coming spring!

Slight change to my office window view from Tokyo Tower🗼 to the Tour Eiffel. 🇫🇷
November 15, 2025 at 6:42 AM
Reposted by Gytis Dudas
The deadly fever in Ethiopia has been identified as Marburg disease.
It’s the first time a Marburg outbreak has been identified in Ethiopia.
#IDsky 🧪

www.afro.who.int/countries/et...
Ethiopia confirms first outbreak of Marburg virus disease
Ethiopia’s Ministry of Health has confirmed an outbreak of Marburg virus disease in the South Ethiopia Region, the first of its kind in the country, following laboratory testing of samples from a clus...
www.afro.who.int
November 14, 2025 at 8:07 PM
Talking about RNA viruses escaping from labs in the scientific community is not controversial per se *when there is evidence of it* & the burden of proof is not that high.
Emergence and characterization of historically extinct virulent genotype IV Newcastle disease virus in wild and domestic birds: genetic insights, pathogenicity, and vaccine efficacy journals.asm.org/doi/10.1128/...
Emergence and characterization of historically extinct virulent genotype IV Newcastle disease virus in wild and domestic birds: genetic insights, pathogenicity, and vaccine efficacy | Journal of Virology
Virulent Newcastle disease virus (NDV), particularly emerging isolates, poses a major threat to poultry health and production, causing severe morbidity, high mortality, and economic losses. While ancestral class II genotypes II and IX have persisted globally across various bird species, the status of genotype IV NDV—last reported in India in 2000—had been uncertain. This study documents the emergence of genotype IV isolates in wild and domestic birds across China from 2021 to 2023, marking their return after more than two decades of presumed extinction. The representative isolate, KS02, showed severe lethality and high transmissibility in chicks compared to the circulating virus. The LaSota vaccine conferred complete protection against this isolate only when HI titers were at least twofold above the conventional protective threshold. These findings underscore the significant risk posed by reemerging genotype IV NDV, highlighting the urgent need for surveillance and updated vaccination strategies.
journals.asm.org
November 13, 2025 at 4:40 PM
Reposted by Gytis Dudas
Update on the wild #polio discovery in Germany: The virus was found in wastewater in Hamburg. @rki.de, the German public health agency, says the virus sequence is very similar to some isolated in Afghanistan, so the likely source was an infected human. (page 10 here: www.rki.de/DE/Aktuelles...)
www.rki.de
November 13, 2025 at 1:04 PM
Reposted by Gytis Dudas
I recently gave a talk at Cornell and sat down with Dr. Leifer for her "Immune" podcast. I really enjoyed our wide-ranging conversation, from how I got started in science, how immunity shapes evolution, pandemic risk, and, the current state of US science.

🎧👇

podcasts.apple.com/us/podcast/v...
Virus-immune Tug-of-war with Kristian Andersen
Podcast Episode · Immune · 11/11/2025 · 1h
podcasts.apple.com
November 13, 2025 at 12:23 AM
Reposted by Gytis Dudas
Our lab's paper describing the North American H5N1 epizootic is out now in Nature! So thrilled to have this out, and congratulations to @lambod50.bsky.social for all the fantastic work on this: www.nature.com/articles/s41...
Ecology and spread of the North American H5N1 epizootic - Nature
The panzootic of highly pathogenic H5N1 since 2021 was driven by around nine introductions into the Atlantic and Pacific flyways, followed by rapid dissemination through wild migratory birds, primaril...
www.nature.com
November 12, 2025 at 7:33 PM
Reposted by Gytis Dudas
My 1st first-author paper is out as a preprint! Excited to share the fascinating story of marine-feeding vampire bats 🌊🦇 We found that marine-diet bats were exposed to #H5#AvianFlu 🦠 from marine wildlife and could potentially spread it to livestock via blood feed🩸
doi.org/10.1101/2025.11.09.686930
November 11, 2025 at 8:38 PM
Reposted by Gytis Dudas
New paper out on virus transmission in hospitals. Predictable patterns of airflow on hospital wards explained 3/4 of SARS-CoV-2 transmission events between patients. www.journalofhospitalinfection.com/article/S019...
The role of spatial distance in SARS-CoV-2 nosocomial transmission
The nosocomial transmission of respiratory viruses causes significant disruption to hospital care, but the spatial dynamics of transmission on hospital wards are poorly understood.
www.journalofhospitalinfection.com
November 11, 2025 at 3:01 PM
Reposted by Gytis Dudas
"SARS-CoV-2 is too well-adapted to humans [hence, insert your favorite conspiracy theory]".

That was never right because, for one, SARS-CoV-2 is a pandemic virus so it necessarily had to be "well-adapted".

Now, a new study shows the same is true for BANAL-236 - a related virus isolated from bats.
November 10, 2025 at 8:09 PM
Galbut (technically Galbūt) virus is Darren's discovery child named in Lithuanian (together with Chaq, a Klingon-named satellite of Galbūt) that turned out to be the most common RNA virus of Drosophila melanogaster. I'm loving the emerging "genomic epi, but like in insects" chapter of metagenomics!
November 10, 2025 at 4:51 PM
Reposted by Gytis Dudas
Come join us - we are recruiting a postdoc in phylodynamics and epidemiological modelling to join an exciting project on foot-and-mouth-disease virus in African buffalo
www.jobs.gla.ac.uk/job/research...
Please share widely!
#jobs #disease #ecology #evolution #phylodynamics
Research Assistant/Associate
Job Purpose You will contribute to an international collaborative project entitled “Multi-scale infection dynamics from cells to landscapes: FMD in African buffalo”, working with Prof Roman Biek. T...
www.jobs.gla.ac.uk
November 9, 2025 at 9:11 PM
Reposted by Gytis Dudas
Reposted by Gytis Dudas
If you are looking for a PhD in the UK, please check out the LIDo program - www.lido-dtp.ac.uk/apply.
If you are interested in viruses and making genetically edited salmon, please look up my icase project.
International students are welcome to apply!
Please reach out if you have questions.
November 4, 2025 at 11:14 AM
Reposted by Gytis Dudas
New work published today from the RasgonLab! The first thesis chapter from @zureishon.bsky.social!

Project highlights some of the difficulties we had with sample collection during the early days of COVID

journals.plos.org/plosntds/art...
Virome profiling of Culex tarsalis through small RNA-seq: A challenge of suboptimal samples
Author summary Mosquitoes are capable of transmitting pathogenic viruses to humans and other vertebrate hosts during feeding. However, they can also carry viruses that infect only mosquitoes, which ar...
journals.plos.org
November 3, 2025 at 9:24 PM
Reposted by Gytis Dudas
Our new preprint is out 🥳🥳🥳

Henipaviruses, like Nipah and Hendra, package their genomes inside helical shells built by thousands of nucleoproteins. These nucleocapsids are essential to protect the viral RNA, but how do they ever let the polymerase in to read the sequence?

👇
November 3, 2025 at 12:26 PM
Reposted by Gytis Dudas
Sad day for the folks who staked their reputations on lab leak conspiracy theories.

www.telegraph.co.uk/global-healt...
October 31, 2025 at 3:51 PM
Reposted by Gytis Dudas
Excited to announce the final version of the Mosquito Cell Atlas is out now in @cellpress.bsky.social!! 🦟🩸

There is SO much left to find & investigate in this dataset (& the rich biology of the Aedes aegypti mosquito)! We hope this helps scientists in many fields!
www.cell.com/cell/fulltex...
A single-nucleus transcriptomic atlas of the adult Aedes aegypti mosquito
A comprehensive single-nucleus RNA-seq atlas of >367,000 nuclei from male and female Aedes aegypti mosquitoes reveals sexual dimorphism in sensory systems and brain cell types and widespread co-expres...
www.cell.com
October 30, 2025 at 4:05 PM
Reposted by Gytis Dudas
As expected, unfortunately.

If ever you needed a reason for never using GISAID ever again (as a data producer or data user - we're both), look no further.

Time to move on to more trusted and transparent solutions.
October 31, 2025 at 1:41 AM
Reposted by Gytis Dudas
Come join the Workshop on Phylogenomics in Cesky Krumlov, Czechia, from January 25 through February 7, 2026!

Applications close November 15!

#phylogenetics #evolution #genomics #ai

evomics.org/apply-worksh...
Apply: Workshop on Phylogenomics 2026 - Evolution and Genomics
Application for the 2026 Workshop on Phylogenomics Use this form to apply for the 2026 Workshop on Phylogenomics being held in Cesky Krumlov, Czechia from 25th January through 7th February, ...
evomics.org
October 29, 2025 at 7:23 PM
Reposted by Gytis Dudas
My paper is out! Uncovering hundreds of exogenous and endogenous RNA viral RdRp sequences amongst uncharacterised sequences in public protein databases. doi.org/10.1093/ve/v... 💻🧬 1/5 🧵
October 28, 2025 at 1:27 PM
Just to add - after the molecular clock anomaly of the 2014 Lomela EBOV outbreak in DRC I wondered if @arambaut.bsky.social & I got the West African/Makona EBOV epidemic root wrong. Very happy to see JT McCrone correct the record (or at least get closer to the truth).
October 20, 2025 at 6:27 AM
Reposted by Gytis Dudas
Our paper on the phenomenon of persistence and latency in Ebola virus in an unobserved reservoir is finally out in preprint: www.biorxiv.org/content/10.1...
Evidence of latency reshapes our understanding of Ebola virus reservoir dynamics
Ebola virus (EBOV) has caused severe outbreaks of haemorrhagic fever in Central and West Africa since the first observed zoonotic epidemic in the late 1970s. While recent outbreaks have revealed much ...
www.biorxiv.org
October 19, 2025 at 11:36 AM