Jason Stajich
@hyphaltip.bsky.social
I study evolution in fungi using genomics at UC Riverside. He/him.
Tongva, Cahuilla, Serrano lands
http://lab.stajich.org/
Tongva, Cahuilla, Serrano lands
http://lab.stajich.org/
Reposted by Jason Stajich
Thanks for hosting me! UCR has such an awesome group of plant folks. Full house at my talk - such an honor ❤️
Thoroughly enjoyed @arunsethuraman.bsky.social's talk at the @ucriverside.bsky.social BPSC seminar today, "Exploring angiosperm polyploidy continuum at the species and population levels" 🌱 🌱
@jrossibarra.bsky.social made an appearance in one of the slides!!
@jrossibarra.bsky.social made an appearance in one of the slides!!
November 20, 2025 at 5:12 AM
Thanks for hosting me! UCR has such an awesome group of plant folks. Full house at my talk - such an honor ❤️
Some of our early work on metal tolerance in yeast being tested on ExFAB Foundry system www.linkedin.com/posts/exfabn... 🤘
ExFAB UC Riverside: Accelerating Microbial Heavy Metal Research | NSF ExFAB BioFoundry posted on the topic | LinkedIn
Phenotyping microbial sensitivity to heavy metals (like copper and iron) is key to understanding the molecular basis of tolerance, which can be crucial for successful bioremediation efforts.
At ExFA...
www.linkedin.com
November 20, 2025 at 5:49 PM
Some of our early work on metal tolerance in yeast being tested on ExFAB Foundry system www.linkedin.com/posts/exfabn... 🤘
Reposted by Jason Stajich
Hidden in Plain Sight. How Ks histogram dynamics can reveal and obscure ancient whole genome duplications. https://www.biorxiv.org/content/10.1101/2025.11.19.689290v1
November 20, 2025 at 8:32 AM
Hidden in Plain Sight. How Ks histogram dynamics can reveal and obscure ancient whole genome duplications. https://www.biorxiv.org/content/10.1101/2025.11.19.689290v1
Reposted by Jason Stajich
Our lab from @HHMINEWS & @UCBerkeley is looking for undergrads to come for an internship!
www.hhmi.org/programs/cec...
www.hhmi.org/programs/cec...
Summer Undergraduate Research Experience | HHMI
The Cech Fellows Program is a paid, nine-week summer research experience empowering the next generation of scientific leaders.
www.hhmi.org
November 20, 2025 at 1:59 AM
Our lab from @HHMINEWS & @UCBerkeley is looking for undergrads to come for an internship!
www.hhmi.org/programs/cec...
www.hhmi.org/programs/cec...
Reposted by Jason Stajich
Looking forward to my lecture on Wednesday @ucriverside.bsky.social in the Botany & Plant Sciences seminar series! I’ll present some of our recent work on forward time whole genome sims & demographic inference in the polyploid continuum. See y’all there? plantbiology.ucr.edu/seminars
Seminars
BPSC 250 Seminar Series Fall 2025 Organizer: Louis Santiago Winter 2026 Organizer:
plantbiology.ucr.edu
November 18, 2025 at 1:42 AM
Looking forward to my lecture on Wednesday @ucriverside.bsky.social in the Botany & Plant Sciences seminar series! I’ll present some of our recent work on forward time whole genome sims & demographic inference in the polyploid continuum. See y’all there? plantbiology.ucr.edu/seminars
Reposted by Jason Stajich
We are hiring!! Biological Sciences as UNC Charlotte has a broad search for a new assistant professor.
Apps reviewed 12/15.
Please spread the word! 💚⛏️
#PlantSci 🧪🦠🧬
jobs.charlotte.edu/postings/65141
Apps reviewed 12/15.
Please spread the word! 💚⛏️
#PlantSci 🧪🦠🧬
jobs.charlotte.edu/postings/65141
Assistant Professor
Applicants should possess a Ph.D. in the biological sciences or related fields.Candidates are expected to document expertise in their specialty by a record of postdoctoral training, peer reviewed publ...
jobs.charlotte.edu
November 17, 2025 at 2:52 PM
We are hiring!! Biological Sciences as UNC Charlotte has a broad search for a new assistant professor.
Apps reviewed 12/15.
Please spread the word! 💚⛏️
#PlantSci 🧪🦠🧬
jobs.charlotte.edu/postings/65141
Apps reviewed 12/15.
Please spread the word! 💚⛏️
#PlantSci 🧪🦠🧬
jobs.charlotte.edu/postings/65141
Reposted by Jason Stajich
Hi Bluesky community - I'm teaching computational genomics again in the Spring term; always happy to have auditors or folks Zoom in. Just have your students email me for deets.
November 11, 2025 at 10:19 PM
Hi Bluesky community - I'm teaching computational genomics again in the Spring term; always happy to have auditors or folks Zoom in. Just have your students email me for deets.
Reposted by Jason Stajich
Joshua trees make the cover of @newphyt.bsky.social for the issue with our paper, led by @kheyduk.bsky.social, showing that they use water-saving CAM photosynthesis — but only sometimes 🌿 buff.ly/WnPoRXa
November 7, 2025 at 3:12 PM
Joshua trees make the cover of @newphyt.bsky.social for the issue with our paper, led by @kheyduk.bsky.social, showing that they use water-saving CAM photosynthesis — but only sometimes 🌿 buff.ly/WnPoRXa
Reposted by Jason Stajich
Amy Angert and I are recruiting a #postdoc to participate in a collaborative NSF-funded study of demographic responses to climate across the geographic range of the scarlet monkeyflower. Please repost! jobs.ncsu.edu/postings/224...
November 7, 2025 at 3:10 PM
Amy Angert and I are recruiting a #postdoc to participate in a collaborative NSF-funded study of demographic responses to climate across the geographic range of the scarlet monkeyflower. Please repost! jobs.ncsu.edu/postings/224...
Reposted by Jason Stajich
If you need a professional terrestrial phototroph you need a symbiont of plant+fungi. Lichen (Spongiophyton sp) colonized the land already at least in the Early Devonian:
www.science.org/doi/10.1126/...
🧪 ⚒️ #Paleobio #EvoBio #Geology
www.science.org/doi/10.1126/...
🧪 ⚒️ #Paleobio #EvoBio #Geology
November 3, 2025 at 3:03 PM
If you need a professional terrestrial phototroph you need a symbiont of plant+fungi. Lichen (Spongiophyton sp) colonized the land already at least in the Early Devonian:
www.science.org/doi/10.1126/...
🧪 ⚒️ #Paleobio #EvoBio #Geology
www.science.org/doi/10.1126/...
🧪 ⚒️ #Paleobio #EvoBio #Geology
Reposted by Jason Stajich
UC Provost Katherine Newman has announced plans to defund this program, a preemptive capitulation with the feds that has not been ordered and should not occur. Newman has done this with zero consultation with campus-level leadership and none with any faculty — mentors or former fellows included.
November 2, 2025 at 11:01 AM
UC Provost Katherine Newman has announced plans to defund this program, a preemptive capitulation with the feds that has not been ordered and should not occur. Newman has done this with zero consultation with campus-level leadership and none with any faculty — mentors or former fellows included.
Reposted by Jason Stajich
The President’s Postdoctoral Fellowship Program, PPFP, has been a jewel in the crown for faculty development and recruitment at the University of California for years and the results have been an expanded faculty with almost 100% tenure rates — unprecedented success.
November 2, 2025 at 11:01 AM
The President’s Postdoctoral Fellowship Program, PPFP, has been a jewel in the crown for faculty development and recruitment at the University of California for years and the results have been an expanded faculty with almost 100% tenure rates — unprecedented success.
Reposted by Jason Stajich
Our latest #preprint led by Yumary M. Vasquez & Frederik Schulz @jgi.doe.gov
The largest database of giant #virus MAGs (GVMAGs V2) with >18,000 genomes from #marine, freshwater, anthropogenic and terrestrial environments.
www.biorxiv.org/content/10.1...
The largest database of giant #virus MAGs (GVMAGs V2) with >18,000 genomes from #marine, freshwater, anthropogenic and terrestrial environments.
www.biorxiv.org/content/10.1...
October 2, 2025 at 9:10 AM
Our latest #preprint led by Yumary M. Vasquez & Frederik Schulz @jgi.doe.gov
The largest database of giant #virus MAGs (GVMAGs V2) with >18,000 genomes from #marine, freshwater, anthropogenic and terrestrial environments.
www.biorxiv.org/content/10.1...
The largest database of giant #virus MAGs (GVMAGs V2) with >18,000 genomes from #marine, freshwater, anthropogenic and terrestrial environments.
www.biorxiv.org/content/10.1...
Reposted by Jason Stajich
I am hiring! - looking for a Staff Scientist to co-run my research group with me. Staff Scientist is a senior professional scientist role at EMBL. Please forward to people you might know who could be interested! embl.wd103.myworkdayjobs.com/en-US/EMBL/j...
Staff Scientist
About EMBL-EBI EMBL’s European Bioinformatics Institute is a data powerhouse, utilised on a global scale to advance scientific discovery through bioinformatics and solutions to some of the world’s mos...
embl.wd103.myworkdayjobs.com
October 10, 2025 at 7:30 AM
I am hiring! - looking for a Staff Scientist to co-run my research group with me. Staff Scientist is a senior professional scientist role at EMBL. Please forward to people you might know who could be interested! embl.wd103.myworkdayjobs.com/en-US/EMBL/j...
Reposted by Jason Stajich
Excited to share our preprint led by Carlos Voogdt et al
We developed new genetic tools & genome-wide libraries for species of the Bacteroidales order; constructed saturated barcoded transposon libraries in key representatives of three genera.
www.biorxiv.org/content/10.1...
We developed new genetic tools & genome-wide libraries for species of the Bacteroidales order; constructed saturated barcoded transposon libraries in key representatives of three genera.
www.biorxiv.org/content/10.1...
October 13, 2025 at 7:48 AM
Excited to share our preprint led by Carlos Voogdt et al
We developed new genetic tools & genome-wide libraries for species of the Bacteroidales order; constructed saturated barcoded transposon libraries in key representatives of three genera.
www.biorxiv.org/content/10.1...
We developed new genetic tools & genome-wide libraries for species of the Bacteroidales order; constructed saturated barcoded transposon libraries in key representatives of three genera.
www.biorxiv.org/content/10.1...
Reposted by Jason Stajich
This is one of the most common types of bacteria in the human gut - and @typaslab.bsky.social lab @embl.org is doing the hard yards to being able to understand this critical bacteria in far far more detail. Rock on!
Excited to share our preprint led by Carlos Voogdt et al
We developed new genetic tools & genome-wide libraries for species of the Bacteroidales order; constructed saturated barcoded transposon libraries in key representatives of three genera.
www.biorxiv.org/content/10.1...
We developed new genetic tools & genome-wide libraries for species of the Bacteroidales order; constructed saturated barcoded transposon libraries in key representatives of three genera.
www.biorxiv.org/content/10.1...
October 13, 2025 at 4:46 PM
This is one of the most common types of bacteria in the human gut - and @typaslab.bsky.social lab @embl.org is doing the hard yards to being able to understand this critical bacteria in far far more detail. Rock on!
Reposted by Jason Stajich
(COI: I am a longstanding consultant and shareholder of Oxford nanopore). This has been cooking away (the scaling of DNA tech is... that there is a lot of space at the bottom - and also time / Hz space) and nice to see the price for long reads (with methylation!) continue to drop. Whoop!
October 15, 2025 at 4:34 PM
(COI: I am a longstanding consultant and shareholder of Oxford nanopore). This has been cooking away (the scaling of DNA tech is... that there is a lot of space at the bottom - and also time / Hz space) and nice to see the price for long reads (with methylation!) continue to drop. Whoop!
Reposted by Jason Stajich
Fungal phylum-level classification update now available! Used "innovative taxonomy" to describe >100 taxa, from species to phylum, based on long reads, characteristic nucleotides and env-samples.
mycokeys.pensoft.net/article/1616...
#fungi #taxonomy #PacBio #classification #eDNA
mycokeys.pensoft.net/article/1616...
#fungi #taxonomy #PacBio #classification #eDNA
October 20, 2025 at 5:27 PM
Fungal phylum-level classification update now available! Used "innovative taxonomy" to describe >100 taxa, from species to phylum, based on long reads, characteristic nucleotides and env-samples.
mycokeys.pensoft.net/article/1616...
#fungi #taxonomy #PacBio #classification #eDNA
mycokeys.pensoft.net/article/1616...
#fungi #taxonomy #PacBio #classification #eDNA
Reposted by Jason Stajich
I’m very happy this is finally out! Here, we showcase the combination of BONCAT and SIP metaproteomics to uncover rare and active microbes driving anaerobic acetate turnover. We are excited to see what other microbial metabolisms and ecosystems this approach can help to illuminate! 🦠
OUT NOW Activity-targeted metaproteomics uncovers rare syntrophic bacteria central to anaerobic community metabolism by @ryanziels.bsky.social www.nature.com/articles/s41...
Activity-targeted metaproteomics uncovers rare syntrophic bacteria central to anaerobic community metabolism - Nature Microbiology
An approach combining BONCAT, stable isotope probing and metaproteomics showcases the hidden metabolic interconnectivity of microorganisms within an anaerobic digestion community.
www.nature.com
October 21, 2025 at 5:08 PM
I’m very happy this is finally out! Here, we showcase the combination of BONCAT and SIP metaproteomics to uncover rare and active microbes driving anaerobic acetate turnover. We are excited to see what other microbial metabolisms and ecosystems this approach can help to illuminate! 🦠
Reposted by Jason Stajich
Fungal #GenomeSize variation is largely driven by TEs & lineage-specific genome defenses. @tbadet.bsky.social & @danielcroll.bsky.social show that presence/absence of RIP mutation systems influences #genome architecture, identifying a likely novel defense mechanism @plosbiology.org 🧪 plos.io/4hcC5tx
October 16, 2025 at 7:58 AM
Fungal #GenomeSize variation is largely driven by TEs & lineage-specific genome defenses. @tbadet.bsky.social & @danielcroll.bsky.social show that presence/absence of RIP mutation systems influences #genome architecture, identifying a likely novel defense mechanism @plosbiology.org 🧪 plos.io/4hcC5tx
Pay your 2026 membership dues or become a member to save $$ in registration costs and be part of our scientific society.
October 16, 2025 at 6:43 PM
Pay your 2026 membership dues or become a member to save $$ in registration costs and be part of our scientific society.
Registration open for #Fungal26 genetics-gsa.org/fungal-2026/ at Asilomar.
Homepage - 33rd Fungal Genetics Conference
Visit our website to learn more.
genetics-gsa.org
October 16, 2025 at 5:59 PM
Registration open for #Fungal26 genetics-gsa.org/fungal-2026/ at Asilomar.
Reposted by Jason Stajich
Today my @nytimes.com colleagues and I are launching a new series called Lost Science. We interview US scientists who can no longer discover something new about our world, thanks to this year‘s cuts. Here is my first interview with a scientist who studied bees and fires. Gift link: nyti.ms/3IWXbiE
nyti.ms
October 8, 2025 at 11:29 PM
Today my @nytimes.com colleagues and I are launching a new series called Lost Science. We interview US scientists who can no longer discover something new about our world, thanks to this year‘s cuts. Here is my first interview with a scientist who studied bees and fires. Gift link: nyti.ms/3IWXbiE