Miguel Ramirez-Otero
@mckrzo.bsky.social
330 followers 410 following 15 posts
Postdoc in M. Pagano Lab at NYU | PhD with V. Costanzo at IFOM/SEMM/UniMi | DNA replication stress & DNA repair aficionado
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mckrzo.bsky.social
Excited to share my first co-first author paper! We uncovered a conserved role for RAD51/BRCA2 in protecting abasic sites at replication forks from MRE11 cleavage.
#ssDNA gaps, #DNMT1, #POLθ, #Cryo-EM of #RAD51 bound to AP sites, and much more! Check it out!
RAD51 protects abasic sites to prevent replication fork breakage
Hanthi et al. found that RAD51 recognizes and binds to abasic sites. Together with BRCA2, RAD51 prevents the accumulation of abasic site-induced replicative DNA gaps (caused by DNA methylation, oxidat...
www.cell.com
Reposted by Miguel Ramirez-Otero
Reposted by Miguel Ramirez-Otero
genesdev.bsky.social
REVIEW: Modeling and targeting general and chromosome-specific aneuploidy in cancer.
By Aleah Goldberg, Maria Trifas and Teresa Davoli

Learn more here:
➡️ https://genesdev.cshlp.org/content/39/19-20/1132.abstract
Reposted by Miguel Ramirez-Otero
embojournal.org
RNF114 and RNF166 exemplify a new E3 ligases family that recognizes #MARUbylation –hybrid ADP-ribose/ubiquitin modifications– and extends them with K11-linked polyubiquitin
@jnpruneda.bsky.social @michaelnadbio.bsky.social and colleagues
www.embopress.org/doi/full/10....
Reposted by Miguel Ramirez-Otero
scaffidilab.bsky.social
Histone acetylation - not always about transcriptional activation: H4K16ac safeguards the genome replication program by repressing premature replication of heterochromatin. Well done Marta Milan! tinyurl.com/yuy9m8t3
Reposted by Miguel Ramirez-Otero
lucas.farnunglab.com
New week, new tool: Find our Protein Domain Designer tool to generate publication-ready protein domain diagrams here: domaindesigner.farnunglab.com
Protein Domain Designer tool for the generation of publication-ready protein domain diagrams
Reposted by Miguel Ramirez-Otero
olibclarke.bsky.social
This MRC course (and the references therein) is a great place to start. But it is a very broad topic - if you are looking to target e.g. membrane proteins, enzymes, RNA binding proteins you might get more specific sets of recommendations.

youtube.com/playlist?lis...
2023 Cryo-EM Course - YouTube
Held at the MRC Laboratory of Molecular Biology, the 2023 Cryo-EM Course offers insights into several aspects of electron cryo-microscopy. This includes disc...
youtube.com
Reposted by Miguel Ramirez-Otero
barrlab.bsky.social
This preprint title for the win! "The First of Us: Ophiocordyceps use a novel scramblase-binding peptide to manipulate zombie ants" doi.org/10.1101/2025...

Science is cool too! Authors use #celegans to identify the targets... #cilia and scramblases
a painting of a girl with her eyes closed and the watermark tlouhq
ALT: a painting of a girl with her eyes closed and the watermark tlouhq
media.tenor.com
Reposted by Miguel Ramirez-Otero
peiferlabunc.bsky.social
I'm more worried about the impact on my farmer neighbors but science is also affected by Trump's tariff insane policies
Tariff update

At Cytoskeleton, one of our top priorities is to maintain a fair price on high quality products. Unfortunately, tariffs have been implemented on many countries and one of them impacts a very popular line from Switzerland. Currently, that country is subject to 39% tariff on products imported to the USA since August 7th 2025.

The main product line affected is Spirochrome's line of bioprobes for live cell work. Starting Monday 22nd September we will be adding a temporary tariff fee on all the Spirochrome items. Cytoskeleton is taking some of the tariff burden so we can reduce the customer tariff fee to 24% of list price which will be implemented for the duration of the tariff period.

Its an unfortunate situation which we hope will return to normal asap.

Sincerely,
Team at Cytoskeleton Inc.
Reposted by Miguel Ramirez-Otero
elisabethbik.bsky.social
Is there anyone here at one of the universities in Wellington, NZ, who would want to host me to give a talk around November 10th?
Reposted by Miguel Ramirez-Otero
Reposted by Miguel Ramirez-Otero
gdsc-sussex.bsky.social
#New-Paper Rass laboratory reveal DNA2 to be a gatekeeper to homologous recombination at stalled DNA replication forks, rrequired to stave off cellular senescence. Their findings provide a molecular explanation for the association of DNA2 with primordial dwarfism and cancer.

doi.org/10.1038/s415...
DNA2 enables growth by restricting recombination-restarted replication - Nature
DNA2 suppresses recombination-restarted replication and checkpoint activation at stalled forks, and its loss triggers recombination-dependent synthesis, checkpoint signalling and cell-cycle exit, high...
doi.org
Reposted by Miguel Ramirez-Otero
u-rass.bsky.social
My first post on bsky to share our latest research in @nature.com: “DNA2 enables growth by restricting recombination-restarted replication” - defines DNA2’s essential function & elucidates links with primordial dwarfism and cancer. Thanks to the lab, collaborators & @ukri.org @acmedsci.bsky.social
DNA2 enables growth by restricting recombination-restarted replication - Nature
DNA2 suppresses recombination-restarted replication and checkpoint activation at stalled forks, and its loss triggers recombination-dependent synthesis, checkpoint signalling and cell-cycle exit, high...
www.nature.com
Reposted by Miguel Ramirez-Otero
ardemp.bskyverified.social
Of course I signed this! Please join us.
peterdaszak.bsky.social
Launched today! Join 6 Nobel Laureates, 27 Members of the US National Academies & the Scientific Advisory Board of @accountabilityji.bsky.social in signing this petition demanding RFK Jr.'s resignation.

www.change.org/p/demand-rfk...
Sign the Petition
Demand RFK Jr. Resign: Petition for a Healthy America
www.change.org
Reposted by Miguel Ramirez-Otero
thanhneville.medsky.social
I am so disturbed by this image of ICE agents at Stanford hospital. They do not belong here--actually, they don't belong anywhere.
Reposted by Miguel Ramirez-Otero
griffithslab.bsky.social
Sometimes, knocking out a gene isn't a good way to figure out the function of that gene ...

In our new @jcellsci.bsky.social paper, we report potent transcriptional adaptation by cytotoxic T lymphocytes (CTLs) in response to CRISPR/Cas9-mediated deletion of the important polarity protein CDC42 🧵⬇️
Reposted by Miguel Ramirez-Otero
Reposted by Miguel Ramirez-Otero
Reposted by Miguel Ramirez-Otero
Reposted by Miguel Ramirez-Otero
ceesdekker.bsky.social
WORK!

I currently have 5 (!) open positions for postdocs/PhD students in our CDlab for projects:

- Nanopore protein sequencing
- Archaeal CDV cell division
- Microfluidics for synthetic cells
- Nuclear Pore Complex
- Origami mimics of peroxisomes

Please apply! ceesdekkerlab.nl/come-join-us/

RT=👍